| Literature DB >> 33329742 |
Man Liu1,2, Qiufang Si3,2, Songyun Ouyang4, Zhigang Zhou5, Meng Wang5, Chunling Zhao4, Ting Yang3,2, Yulin Wang1,2, Xue Zhang1,2, Wenbo Xie6, Liping Dai1,2, Jitian Li7.
Abstract
The lack of a useful biomarker partly contributes to the increased mortality of non-small cell lung cancer (NSCLC). MiRNAs have become increasingly appreciated in diagnosis of NSCLC. In the present study, we used microarray to screen 2,549 miRNAs in serum samples from the training cohort (NSCLC, n = 10; the healthy, n = 10) to discover differentially expressed miRNAs (DEMs). Quantitative reverse-transcription polymerase chain reaction (qRT-PCR) assay was applied to validate the expression level of selected overexpressed DEMs of NSCLC in a validation cohort (NSCLC, n = 30; the healthy, n = 30). Area under the receiver operating characteristic curve (AUC) was performed to evaluate diagnostic capability of the DEMs. The expression of the miRNAs in tissues was analyzed based on the TCGA database. Subsequently, the target genes of the miR-4687-3p were predicted by TargetScan. Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis were tested by R software (ClusterProfiler package). NSCLC cells were transfected with inhibitor or mimic to down-regulate or up-regulate the miR-4687-3p level. The function of miR-4687-3p on proliferation, invasion, and migration of lung cancer cells were investigated through CCK-8 and Transwell assays, respectively. In the results, we identified serum miR-4687-3p that provided a high diagnostic accuracy of NSCLC (AUC = 0.679, 95%CI: 0.543-0.815) in the validation cohort. According to the TCGA database, we found that the miR-4687-3p level was significantly higher in NSCLC tissues than in normal lung tissues (p < 0.05). GO and KEGG pathway enrichment analysis showed that postsynaptic specialization and TGF-β signaling pathway were significantly enriched. Down-regulation of miR-4687-3p could suppress the proliferation, invasion, and migration of the NSCLC cells, compared with inhibitor negative control (NC). Meanwhile, overexpression of miR-4687-3p could promote the proliferation, invasion, and migration of the NSCLC cells compared with mimic NC. As a conclusion, our study first discovered that serum miR-4687-3p might have clinical potential as a non-invasive diagnostic biomarker for NSCLC and play an important role in the development of NSCLC.Entities:
Keywords: NSCLC; bioinformatics; biomarker; miR-4687-3p; microarray
Year: 2020 PMID: 33329742 PMCID: PMC7721467 DOI: 10.3389/fgene.2020.597508
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1An overview of the workflow of the study design.
Characteristics of study participants in the training and validation cohort.
| 20 | 30 | ||
| Age, year | |||
| Mean | 53.9 | 54.1 | |
| 4.3 | 12.0 | ||
| Sex | |||
| Male | 10 (50%) | 14 (46.7%) | |
| Female | 10 (50%) | 16 (53.3%) | |
| 20 | 30 | ||
| Age, year | |||
| Mean | 56.1 | 60.8 | |
| 5.9 | 9.5 | ||
| Sex | |||
| Male | 10 (50%) | 19 (63.3%) | |
| Female | 10 (50%) | 11 (36.7%) | |
| Histopathological type | |||
| LUSC | 6 (30%) | 13 (43.3%) | |
| LUAD | 14 (70%) | 17 (56.7%) | |
| Stage | |||
| I+II | 5 (25%) | 1 (3%) | |
| III+IV | 10 (50%) | 24 (80%) | |
| Undetermined | 5 (25%) | 5 (17%) | |
FIGURE 2(A) Hierarchical clustering and (B) Volcano Plot of the differentially expressed miRNAs (DEMs) in the comparison of NSCLC and the healthy (fold change > 1.5, p < 0.05).
Six differentially overexpressed serum miRNAs in NSCLC.
| MiR-1915-5p | 0.027 | 3.3 | 10.2 | 6.6 |
| MiR-432-3p | 0.042 | 2.3 | 25.5 | 18.6 |
| MiR-4488 | 0.022 | 2.5 | 23.7 | 16.4 |
| MiR-4687-3p | 0.010 | 1.5 | 470.8 | 301.1 |
| MiR-520a-5p | 0.040 | 3.1 | 28.3 | 23.2 |
| MiR-6087 | 0.001 | 1.5 | 2764.2 | 1772.4 |
Primer sequence of the selected six miRNAs and reference miRNA.
| MiR-1915-5p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGGCCCG | ATATCGACCTTGCCTTGCTGCC | AGTGCAGGGTCCGAGGTATT |
| MiR-432-3p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAGACAT | AATCCGCTGGATGGCTCCTCC | AGTGCAGGGTCCGAGGTATT |
| MiR-4488 | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCGCCGG | ATATATCGAGGGGGCGGGCT | AGTGCAGGGTCCGAGGTATT |
| MiR-4687-3p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGCCTGC | ATATCCGTGGCTGTTGGAGGGG | AGTGCAGGGTCCGAGGTATT |
| MiR-520a-5p | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACAGAAAG | CCGCGCTCCAGAGGGAAGTA | AGTGCAGGGTCCGAGGTATT |
| MiR-6087 | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACGCTCGC | ATATATCGTGAGGCGGGGGG | AGTGCAGGGTCCGAGGTATT |
| MiR-484 | CTCAACTGGTGTCGTGGAGTCGGCAATTCAGTTGAGATCGGGAG | ACACTCCAGCTGGGTCAGGCTC AGTCCCCT | TGGTGTCGTGGAGTCG |
FIGURE 3(A) Scatter diagram exhibited the row intensity of six miRNAs in NSCLC serum samples (n = 10) and healthy serum samples (n = 10) in training cohort. (B) Scatter diagram exhibited the relative expression of six miRNAs of NSCLC serum samples (n = 30) and the healthy serum samples (n = 30) in validation cohort. (C–E) Receiver operating characteristic curve analysis of miR-4687-3p, miR-6087, and combined with the two miRNAs for NSCLC diagnosis in the validation cohort.
FIGURE 4(A) The expression of miR-4687-3p in LUAD tissues (n = 521) and normal lung tissues (n = 46). (B) The expression of miR-4687-3p in LUSC tissues (n = 478) and normal lung tissues (n = 45). Data were from TCGA database. LUAD, Lung Adenocarcinoma; LUSC, Lung Squamous Cell Carcinomas.
FIGURE 5(A) Plot of the enriched GO terms. Go enrichment analysis for miR-4687-3p-related mRNAs. (B) Plot of the KEGG pathways. KEGG pathway enrichment analysis for miR-4687-3p-related mRNAs. The bubble color and size represent enrichment significance and the number of target mRNAs enriched in a GO term or pathway, respectively. p < 0.05 was used as the threshold to select GO and KEGG terms.
FIGURE 6Comparison of miR-4687-3p in five NSCLC cells. The PC-9 cells were used as the control.
FIGURE 7(A) CALU-3 cells were transfected with inhibitor control and miR-4687-3p inhibitor, respectively. Cell proliferation was evaluated by the CCK-8 assay at 24, 48, and 72 h. (B) PC-9 Cells were transfected with mimic control and miR-4687-3p mimic, respectively. Cell proliferation was evaluated by the CCK-8 assay at 24, 48, and 72 h. *p < 0.05, **p < 0.01, ***p < 0.001.
FIGURE 8(A–C) Transwell invasion assay with Matrigel was performed in miR-4687-3p inhibitor or inhibitor control transfected CALU-3 cells (Magnification ×400). (D–F) Transwell invasion assay with Matrigel was performed in miR-4687-3p mimic or mimic control transfected PC-9 cells (Magnification ×400). *p < 0.05, ***p < 0.001.
FIGURE 9(A–C) Transwell migration assay without Matrigel was performed in miR-4687-3p inhibitor or inhibitor control transfected CALU-3 cells (Magnification ×400). (D–F) Transwell migration assay without Matrigel was performed in miR-4687-3p mimic or mimic control transfected PC-9 cells (Magnification ×400). ***p < 0.001.