| Literature DB >> 33329709 |
Ahmet Muderrisoglu1, Elif Babaoglu2, Elif Tugce Korkmaz2, Mert C Ongun1, Erdem Karabulut3, Alper B Iskit1, Salih Emri2, Melih O Babaoglu1.
Abstract
OBJECTIVES: To determine the effects of genetic polymorphisms of ABCB1 (MDR1), CYP2A6, CYP2B6 on smoking status, and clinical outcomes of smoking cessation therapies in a Turkish population.Entities:
Keywords: P-glycoprotein; addiction; cytochrome P450 enzymes; genetic polymorphism; nicotine
Year: 2020 PMID: 33329709 PMCID: PMC7734344 DOI: 10.3389/fgene.2020.571997
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Details of genotyping methods.
| 5′-TGG ACT GTT GTG CTC TTC CC-3′ | 455 bp | 37°C for 1 h | 377 + 43 + 35 bp for C allele | ||
| 5′-TGT CAC TTT ATC CAG CTC TCC A-3′ | 412 + 43 bp for T allele | ||||
| 5′-TGC AGG CTA TAG GTT CCA GG-3′ | 224 bp | 65°C for 1 h | 198 + 26 bp for G allele | ||
| 5′-TTT AGT TTG ACT CAC CTT CCC G-3′ | 224 bp for T allele | ||||
| 5′-TGC AGG CTA TAG GTT CCA GG-3′ | 220 bp | 37°C for 1 h | 220 bp for T allele | ||
| 5′-GTT TGA CTC ACC TTC CCA GG-3′ | 206 + 14 bp for A allele | ||||
| 5′-TGT TTT CAG CTG CTT GAT GG-3′ | 197 bp | 37°C for 1 h | 158 + 39 bp for C allele | ||
| 5′-AAG GCA TGT ATG TTG GCC TC-3′ | 197 bp for T allele | ||||
| 5′-CAC CGA AGT GTA CCC TAT GCT G-3′ | 1,338 bp | 37°C for 1 h and 60°C for 1 h | 800 + 434 + 104 bp for the *1A allele | ||
| 5′-AAA ATG GGC ATG AAC GCC C-3′ | 800 + 285 + 149 + 104 bp for the *1B allele | ||||
| 759 + 285 + 149 + 104 + 41 bp for the *4 allele | |||||
| 5′-TCC CTC TTT TTC AGG CAG GCA GTA G-3′ (F-WT*) | 385 bp | *9 | |||
| 5′-TCC CTC TTT TTC AGG CAG GCA GTA T-3′ (F-M**) | |||||
| 5′-TCC TGT CTT TCT GAT GCT GA-3 (R) | |||||
| 5′-GAC AGA AGG ATG AGG GAG GAA-3′ | 640 bp | 37°C for 1 h | 297 + 171 + 116 + 56 bp for the A allele | ||
| 5′-CTC CCT CTG TCT TTC ATT CTG T-3′ | 468 + 116 + 56 bp for the G allele |
Characteristics and demographics of participants.
| Male | 70, (53.8) | 57, (43.8) | 0.11 |
| Female | 60, (46.2) | 73, (56.2) | |
| Age | 39.2 ± 1.1 | 41.6 ± 1.1 | 0.12 |
Smoking cessation rates among treatment modalities.
| NRT | 8/40, (20) |
| Bupropion | 14/47, (29.8) |
| Bupropion + NRT | 6/15, (40) |
| Varenicline | 16/28, (57.1) |
| Total | 44/130, (33.8) |
| χ2, df, | 10.81, 3, 0.013 |
Allele frequencies for ABCB1 genetic polymorphisms.
| C | 150, (57.7) | 118, (45.4) | 7.88, 1, 0.005 | |
| T | 110, (42.3) | 142, (54.6) | ||
| G | 156, (60) | 119, (45.8) | 10.6, 1, 0.001 | |
| T/A | 104, (40) | 141, (54.2) | ||
| C | 148, (56.9) | 124, (47.7) | 4.44, 1, 0.035 | |
| T | 112, (43.1) | 136, (52.3) |
FIGURE 1The frequency of 1236TT-2677TT-3435TT haplotype in non-smokers as compared to smokers. The frequencies were 21.5% (95% CI = 14.5–30.3) vs. 10.8% (5.4–16.7), respectively; χ2 = 5.57, df = 1, and *p = 0.018) (■: 1236TT-2677TT-3435TT, : Other haplotypes).
Estimated haplotype frequencies and their possible association with smoking status.
| C | G | C | 0.4712 | 0.3968 | 1 | - |
| T | T | T | 0.3296 | 0.469 | 0.59 (0.40–0.88) | 0.0099 |
| C | G | T | 0.0857 | 0.0454 | 1.53 (0.70–3.35) | 0.29 |
| T | T | C | 0.0503 | 0.0616 | 0.70 (0.31–1.59) | 0.4 |
| T | G | C | 0.0431 | 0.0156 | 2.44 (0.74–8.10) | 0.15 |
| C | T | T | 0.0155 | 0.0088 | 1.49 (0.25–8.90) | 0.66 |
| C | T | C | 0.0046 | 0.003 | 1.25 (0.04–34.85) | 0.9 |
| T | G | T | 0 | 0 | – | – |
FIGURE 2Plasma cotinine levels and NMR values in CYP2A6 activity subgroups. (A) Cotinine levels were 348 ± 20 (95% CI = 308–387) ng/ml in fast metabolizers (n = 104), 383 ± 56 (266–501) ng/ml in intermediate metabolizers (n = 19), and 1,046 ± 216 (490–1,601) ng/ml in slow metabolizers (n = 5) (**adjusted p = 0.0024, *adjusted p = 0.0105). (B) NMRs in CYP2A6 activity subgroups were 1.57 ± 0.14 (95% CI = 1.29–1.85) in fast metabolizers (n = 102), 1.28 ± 0.22 (0.82–1.74) in intermediate metabolizers (n = 19), and 0.34 ± 0.20 (–0.28–0.96) in slow metabolizers (n = 4) (*p = 0.04).