Literature DB >> 33327400

Bird Eye View of Protein Subcellular Localization Prediction.

Ravindra Kumar1, Sandeep Kumar Dhanda2.   

Abstract

Proteins are made up of long chain of amino acids that perform a variety of functions in different organisms. The activity of the proteins is determined by the nucleotide sequence of their genes and by its 3D structure. In addition, it is essential for proteins to be destined to their specific locations or compartments to perform their structure and functions. The challenge of computational prediction of subcellular localization of proteins is addressed in various in silico methods. In this review, we reviewed the progress in this field and offered a bird eye view consisting of a comprehensive listing of tools, types of input features explored, machine learning approaches employed, and evaluation matrices applied. We hope the review will be useful for the researchers working in the field of protein localization predictions.

Entities:  

Keywords:  integrated method; machine learning based method; protein localization; sequence compositional information-based method; signal peptide-based method

Year:  2020        PMID: 33327400     DOI: 10.3390/life10120347

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


  4 in total

1.  Improving Protein Subcellular Location Classification by Incorporating Three-Dimensional Structure Information.

Authors:  Ge Wang; Yu-Jia Zhai; Zhen-Zhen Xue; Ying-Ying Xu
Journal:  Biomolecules       Date:  2021-10-29

Review 2.  Computational methods for protein localization prediction.

Authors:  Yuexu Jiang; Duolin Wang; Weiwei Wang; Dong Xu
Journal:  Comput Struct Biotechnol J       Date:  2021-10-19       Impact factor: 7.271

3.  Understanding Diversity, Evolution, and Structure of Small Heat Shock Proteins in Annelida Through in Silico Analyses.

Authors:  Mercedes de la Fuente; Marta Novo
Journal:  Front Physiol       Date:  2022-04-13       Impact factor: 4.755

Review 4.  mRNA Trafficking in the Nervous System: A Key Mechanism of the Involvement of Activity-Regulated Cytoskeleton-Associated Protein (Arc) in Synaptic Plasticity.

Authors:  Michal Fila; Laura Diaz; Joanna Szczepanska; Elzbieta Pawlowska; Janusz Blasiak
Journal:  Neural Plast       Date:  2021-09-23       Impact factor: 3.599

  4 in total

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