Literature DB >> 33326747

Condensed Chromatin Behaves like a Solid on the Mesoscale In Vitro and in Living Cells.

Hilmar Strickfaden1, Thomas O Tolsma2, Ajit Sharma1, D Alan Underhill3, Jeffrey C Hansen4, Michael J Hendzel5.   

Abstract

The association of nuclear DNA with histones to form chromatin is essential for temporal and spatial control of eukaryotic genomes. In this study, we examined the physical state of condensed chromatin in vitro and in vivo. Our in vitro studies demonstrate that self-association of nucleosomal arrays under a wide range of solution conditions produces supramolecular condensates in which the chromatin is physically constrained and solid-like. By measuring DNA mobility in living cells, we show that condensed chromatin also exhibits solid-like behavior in vivo. Representative heterochromatin proteins, however, display liquid-like behavior and coalesce around the solid chromatin scaffold. Importantly, euchromatin and heterochromatin show solid-like behavior even under conditions that produce limited interactions between chromatin fibers. Our results reveal that condensed chromatin exists in a solid-like state whose properties resist external forces and create an elastic gel and provides a scaffold that supports liquid-liquid phase separation of chromatin binding proteins.
Copyright © 2020 Elsevier Inc. All rights reserved.

Keywords:  TAD; chromatin; condensate; condensation; euchromatin; heterochromatin; histone acetylation; nucleosomal array; nucleus; phase separation

Mesh:

Substances:

Year:  2020        PMID: 33326747     DOI: 10.1016/j.cell.2020.11.027

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  41 in total

1.  Histone H3 and H4 tails play an important role in nucleosome phase separation.

Authors:  Erin F Hammonds; Megan Cleland Harwig; Emeleeta A Paintsil; Emma A Tillison; R Blake Hill; Emma A Morrison
Journal:  Biophys Chem       Date:  2022-02-02       Impact factor: 2.352

Review 2.  The solid and liquid states of chromatin.

Authors:  Jeffrey C Hansen; Kazuhiro Maeshima; Michael J Hendzel
Journal:  Epigenetics Chromatin       Date:  2021-10-30       Impact factor: 4.954

3.  The interplay of chromatin phase separation and lamina interactions in nuclear organization.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit A Potoyan
Journal:  Biophys J       Date:  2021-10-13       Impact factor: 4.033

Review 4.  Phase separation in transcription factor dynamics and chromatin organization.

Authors:  Kaustubh Wagh; David A Garcia; Arpita Upadhyaya
Journal:  Curr Opin Struct Biol       Date:  2021-07-22       Impact factor: 6.809

5.  Targeting KDM4A epigenetically activates tumor-cell-intrinsic immunity by inducing DNA replication stress.

Authors:  Wuchang Zhang; Wei Liu; Lingfei Jia; Demeng Chen; Insoon Chang; Michael Lake; Laurent A Bentolila; Cun-Yu Wang
Journal:  Mol Cell       Date:  2021-03-19       Impact factor: 17.970

6.  Generation and Biochemical Characterization of Phase-Separated Droplets Formed by Nucleic Acid Binding Proteins: Using HP1 as a Model System.

Authors:  Serena Sanulli; Geeta J Narlikar
Journal:  Curr Protoc       Date:  2021-05

Review 7.  Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription.

Authors:  Megan Palacio; Dylan J Taatjes
Journal:  J Mol Biol       Date:  2021-08-30       Impact factor: 5.469

8.  Phosphorylation of the HP1β hinge region sequesters KAP1 in heterochromatin and promotes the exit from naïve pluripotency.

Authors:  Weihua Qin; Enes Ugur; Christopher B Mulholland; Sebastian Bultmann; Irina Solovei; Miha Modic; Martha Smets; Michael Wierer; Ignasi Forné; Axel Imhof; M Cristina Cardoso; Heinrich Leonhardt
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

Review 9.  Single-cell imaging of genome organization and dynamics.

Authors:  Liangqi Xie; Zhe Liu
Journal:  Mol Syst Biol       Date:  2021-07       Impact factor: 11.429

Review 10.  Higher-order organization of biomolecular condensates.

Authors:  Charlotte M Fare; Alexis Villani; Lauren E Drake; James Shorter
Journal:  Open Biol       Date:  2021-06-16       Impact factor: 6.411

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