Literature DB >> 33326066

Bioinformatics Approaches for Functional Prediction of Long Noncoding RNAs.

Fayaz Seifuddin1, Mehdi Pirooznia2.   

Abstract

There is accumulating evidence that long noncoding RNAs (lncRNAs) play crucial roles in biological processes and diseases. In recent years, computational models have been widely used to predict potential lncRNA-disease relations. In this chapter, we systematically describe various computational algorithms and prediction tools that have been developed to elucidate the roles of lncRNAs in diseases, coding potential/functional characterization, or ascertaining their involvement in critical biological processes as well as provide a comprehensive summary of these applications.

Keywords:  LncRNA Bioinformatics; LncRNA coding potential; LncRNA functional prediction; LncRNA–disease association; LncRNA–protein correlation

Year:  2021        PMID: 33326066     DOI: 10.1007/978-1-0716-1158-6_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  4 in total

1.  FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome.

Authors:  Valentin Wucher; Fabrice Legeai; Benoît Hédan; Guillaume Rizk; Lætitia Lagoutte; Tosso Leeb; Vidhya Jagannathan; Edouard Cadieu; Audrey David; Hannes Lohi; Susanna Cirera; Merete Fredholm; Nadine Botherel; Peter A J Leegwater; Céline Le Béguec; Hille Fieten; Jeremy Johnson; Jessica Alföldi; Catherine André; Kerstin Lindblad-Toh; Christophe Hitte; Thomas Derrien
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

Review 2.  A Review on Recent Computational Methods for Predicting Noncoding RNAs.

Authors:  Yi Zhang; Haiyun Huang; Dahan Zhang; Jing Qiu; Jiasheng Yang; Kejing Wang; Lijuan Zhu; Jingjing Fan; Jialiang Yang
Journal:  Biomed Res Int       Date:  2017-05-03       Impact factor: 3.411

Review 3.  Long non-coding RNAs and complex diseases: from experimental results to computational models.

Authors:  Xing Chen; Chenggang Clarence Yan; Xu Zhang; Zhu-Hong You
Journal:  Brief Bioinform       Date:  2017-07-01       Impact factor: 11.622

4.  A Novel Approach for Predicting Disease-lncRNA Associations Based on the Distance Correlation Set and Information of the miRNAs.

Authors:  Haochen Zhao; Linai Kuang; Lei Wang; Zhanwei Xuan
Journal:  Comput Math Methods Med       Date:  2018-06-26       Impact factor: 2.238

  4 in total
  1 in total

Review 1.  Bioinformatic Tools for the Analysis and Prediction of ncRNA Interactions.

Authors:  Andrés Rincón-Riveros; Duvan Morales; Josefa Antonia Rodríguez; Victoria E Villegas; Liliana López-Kleine
Journal:  Int J Mol Sci       Date:  2021-10-22       Impact factor: 5.923

  1 in total

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