Literature DB >> 33325692

Nucleic Acid Based Constitutional Dynamic Networks: From Basic Principles to Applications.

Liang Yue1, Shan Wang1, Zhixin Zhou1, Itamar Willner1.   

Abstract

Inspired by nature where intracellular dynamic interactions between DNA, RNA and proteins processed within complex networks leading to programmed reaction patterns, extensive research efforts are directed to mimic these processes by chemical means, "Systems Chemistry". The present perspective introduces nucleic acids as functional modules to construct constitutional dynamic networks, CDNs, mimicking natural networks. The base sequences comprising nucleic acids provide a rich "tool box" to assemble signal-triggered reconfigurable CDNs revealing adaptive and hierarchically adaptive properties, intercommunication between CDNs, and feedback-driven reaction pathways similar to natural systems. Pathways for the evolution of CDNs and the formation of networks of enhanced complexities are discussed. Different applications of constitutional dynamic networks are introduced including programmed catalysis, CDN-guided optical and catalytic functions of nanoparticle aggregates, and CDN-dictated stiffness and self-healing functions of hydrogels. Future perspectives of the field in designing dissipative transient CDNs, CDNs-guided transcription/translation synthesis of selective proteins, and the challenging integration of CDNs into cell-like containments aiming to assemble "artificial cells" are addressed.

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Year:  2020        PMID: 33325692     DOI: 10.1021/jacs.0c09891

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

1.  Dissipative biocatalytic cascades and gated transient biocatalytic cascades driven by nucleic acid networks.

Authors:  Yu Ouyang; Pu Zhang; Itamar Willner
Journal:  Sci Adv       Date:  2022-05-06       Impact factor: 14.957

Review 2.  DNA-Based Molecular Engineering of the Cell Membrane.

Authors:  Xiaodong Li; Tiantian Wang; Yue Sun; Chang Li; Tianhuan Peng; Liping Qiu
Journal:  Membranes (Basel)       Date:  2022-01-19

3.  Gated Transient Dissipative Dimerization of DNA Tetrahedra Nanostructures for Programmed DNAzymes Catalysis.

Authors:  Zhenzhen Li; Jianbang Wang; Zhixin Zhou; Michael P O'Hagan; Itamar Willner
Journal:  ACS Nano       Date:  2022-02-20       Impact factor: 15.881

4.  Autoinhibited transient, gated, and cascaded dynamic transcription of RNAs.

Authors:  Zhenzhen Li; Jianbang Wang; Itamar Willner
Journal:  Sci Adv       Date:  2022-08-17       Impact factor: 14.957

5.  Cascaded dissipative DNAzyme-driven layered networks guide transient replication of coded-strands as gene models.

Authors:  Jianbang Wang; Zhenzhen Li; Itamar Willner
Journal:  Nat Commun       Date:  2022-07-29       Impact factor: 17.694

6.  Integration of photocatalytic and dark-operating catalytic biomimetic transformations through DNA-based constitutional dynamic networks.

Authors:  Chen Wang; Michael P O'Hagan; Ehud Neumann; Rachel Nechushtai; Itamar Willner
Journal:  Nat Commun       Date:  2021-07-09       Impact factor: 14.919

Review 7.  DNA Assembly-Based Stimuli-Responsive Systems.

Authors:  Shasha Lu; Jianlei Shen; Chunhai Fan; Qian Li; Xiurong Yang
Journal:  Adv Sci (Weinh)       Date:  2021-05-14       Impact factor: 16.806

  7 in total

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