Nidhi Parikh 1 , Ashlynn R Daughton 1 , William Earl Rosenberger 1 , Derek Jacob Aberle 2 , Maneesha Elizabeth Chitanvis 3 , Forest Michael Altherr 4 , Nileena Velappan 5 , Geoffrey Fairchild 1 , Alina Deshpande 5 Show Affiliations »
Abstract
BACKGROUND: Currently, the identification of infectious disease re-emergence is performed without describing specific quantitative criteria that can be used to identify re-emergence events consistently. This practice may lead to ineffective mitigation. In addition, identification of factors contributing to local disease re-emergence and assessment of global disease re-emergence require access to data about disease incidence and a large number of factors at the local level for the entire world. This paper presents Re-emerging Disease Alert (RED Alert), a web-based tool designed to help public health officials detect and understand infectious disease re-emergence. OBJECTIVE: Our objective is to bring together a variety of disease-related data and analytics needed to help public health analysts answer the following 3 primary questions for detecting and understanding disease re-emergence: Is there a potential disease re-emergence at the local (country) level? What are the potential contributing factors for this re-emergence? Is there a potential for global re-emergence? METHODS: We collected and cleaned disease-related data (eg, case counts, vaccination rates, and indicators related to disease transmission) from several data sources including the World Health Organization (WHO), Pan American Health Organization (PAHO), World Bank, and Gideon. We combined these data with machine learning and visual analytics into a tool called RED Alert to detect re-emergence for the following 4 diseases: measles, cholera, dengue, and yellow fever. We evaluated the performance of the machine learning models for re-emergence detection and reviewed the output of the tool through a number of case studies. RESULTS: Our supervised learning models were able to identify 82%-90% of the local re-emergence events, although with 18%-31% (except 46% for dengue) false positives. This is consistent with our goal of identifying all possible re-emergences while allowing some false positives. The review of the web-based tool through case studies showed that local re-emergence detection was possible and that the tool provided actionable information about potential factors contributing to the local disease re-emergence and trends in global disease re-emergence. CONCLUSIONS: To the best of our knowledge, this is the first tool that focuses specifically on disease re-emergence and addresses the important challenges mentioned above. ©Nidhi Parikh, Ashlynn R Daughton, William Earl Rosenberger, Derek Jacob Aberle, Maneesha Elizabeth Chitanvis, Forest Michael Altherr, Nileena Velappan, Geoffrey Fairchild, Alina Deshpande. Originally published in JMIR Public Health and Surveillance (http://publichealth.jmir.org), 07.01.2021.
BACKGROUND: Currently, the identification of infectious disease re-emergence is performed without describing specific quantitative criteria that can be used to identify re-emergence events consistently. This practice may lead to ineffective mitigation. In addition, identification of factors contributing to local disease re-emergence and assessment of global disease re-emergence require access to data about disease incidence and a large number of factors at the local level for the entire world. This paper presents Re-emerging Disease Alert (RED Alert), a web-based tool designed to help public health officials detect and understand infectious disease re-emergence. OBJECTIVE: Our objective is to bring together a variety of disease-related data and analytics needed to help public health analysts answer the following 3 primary questions for detecting and understanding disease re-emergence: Is there a potential disease re-emergence at the local (country) level? What are the potential contributing factors for this re-emergence? Is there a potential for global re-emergence? METHODS: We collected and cleaned disease-related data (eg, case counts, vaccination rates, and indicators related to disease transmission) from several data sources including the World Health Organization (WHO), Pan American Health Organization (PAHO), World Bank , and Gideon. We combined these data with machine learning and visual analytics into a tool called RED Alert to detect re-emergence for the following 4 diseases: measles, cholera, dengue, and yellow fever . We evaluated the performance of the machine learning models for re-emergence detection and reviewed the output of the tool through a number of case studies. RESULTS: Our supervised learning models were able to identify 82%-90% of the local re-emergence events, although with 18%-31% (except 46% for dengue) false positives. This is consistent with our goal of identifying all possible re-emergences while allowing some false positives. The review of the web-based tool through case studies showed that local re-emergence detection was possible and that the tool provided actionable information about potential factors contributing to the local disease re-emergence and trends in global disease re-emergence. CONCLUSIONS: To the best of our knowledge, this is the first tool that focuses specifically on disease re-emergence and addresses the important challenges mentioned above. ©Nidhi Parikh, Ashlynn R Daughton, William Earl Rosenberger, Derek Jacob Aberle, Maneesha Elizabeth Chitanvis, Forest Michael Altherr, Nileena Velappan, Geoffrey Fairchild, Alina Deshpande. Originally published in JMIR Public Health and Surveillance (http://publichealth.jmir.org), 07.01.2021.
Entities: Disease
Gene
Species
Keywords:
disease re-emergence; infectious disease; random forest; supervised learning; surveillance; visual analytics
Year: 2021
PMID： 33316766 PMCID： PMC7819778 DOI： 10.2196/24132
Source DB: PubMed Journal: JMIR Public Health Surveill ISSN： 2369-2960