Literature DB >> 33316285

Sample pooling strategies for SARS-CoV-2 detection.

Nefeli Lagopati1, Panagiota Tsioli1, Ioanna Mourkioti1, Aikaterini Polyzou1, Angelos Papaspyropoulos1, Alexandros Zafiropoulos2, Konstantinos Evangelou1, George Sourvinos3, Vassilis G Gorgoulis4.   

Abstract

The worldwide COVID-19 pandemic outburst has caused a serious public health issue with increasing needs of accurate and rapid diagnostic and screening testing. This situation requires an optimized management of the chemical reagents, the consumables, and the human resources, in order to respond accurately and effectively, controlling the spread of the disease. Testing on pooled samples maximizes the number of tested samples, by minimizing the time and the lab supplies needed. The general conceptualization of the pooling method is based on mixing samples together in a batch. Individual testing is needed only if a specific pool exhibits a positive result. The development of alternative hybrid methods, based on "in house" protocols, utilizing commercially available consumables, in combination with a reliable pooling method would provide a solution, focusing on the better exploitation of the personnel and the lab supplies, allowing for rapid screening of a population in a reasonably short time.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Array testing; Hierarchical algorithm; N genes; Pooling methods; SARS-CoV-2

Year:  2020        PMID: 33316285     DOI: 10.1016/j.jviromet.2020.114044

Source DB:  PubMed          Journal:  J Virol Methods        ISSN: 0166-0934            Impact factor:   2.014


  8 in total

1.  Nested Group Testing Procedure.

Authors:  Wenjun Xiong; Juan Ding; Wei Zhang; Aiyi Liu; Qizhai Li
Journal:  Commun Math Stat       Date:  2022-10-01

Review 2.  Strategies for Scaling up SARS-CoV-2 Molecular Testing Capacity.

Authors:  Sanchita Das; Karen M Frank
Journal:  Clin Lab Med       Date:  2022-03-08       Impact factor: 2.172

3.  A Regional Pooling Intervention in a High-Throughput COVID-19 Diagnostic Laboratory to Enhance Throughput, Save Resources and Time Over a Period of 6 Months.

Authors:  Prerna Mandhan; Mansi Sharma; Sushmita Pandey; Neha Chandel; Nidhi Chourasia; Amit Moun; Divyani Sharma; Rubee Sukar; Niyati Singh; Shubhangi Mathur; Aarti Kotnala; Neetu Negi; Ashish Gupta; Anuj Kumar; R Suresh Kumar; Pramod Kumar; Shalini Singh
Journal:  Front Microbiol       Date:  2022-06-09       Impact factor: 6.064

4.  Pulmonary infection by SARS-CoV-2 induces senescence accompanied by an inflammatory phenotype in severe COVID-19: possible implications for viral mutagenesis.

Authors:  Konstantinos Evangelou; Dimitris Veroutis; Koralia Paschalaki; Periklis G Foukas; Nefeli Lagopati; Marios Dimitriou; Angelos Papaspyropoulos; Bindu Konda; Orsalia Hazapis; Aikaterini Polyzou; Sophia Havaki; Athanassios Kotsinas; Christos Kittas; Athanasios G Tzioufas; Laurence de Leval; Demetris Vassilakos; Sotirios Tsiodras; Barry R Stripp; Argyris Papantonis; Giovanni Blandino; Ioannis Karakasiliotis; Peter J Barnes; Vassilis G Gorgoulis
Journal:  Eur Respir J       Date:  2022-08-18       Impact factor: 33.795

5.  SARS-CoV-2 RT-qPCR testing of pooled saliva samples: A case study of 824 asymptomatic individuals and a questionnaire survey in Japan.

Authors:  Junna Oba; Hiroaki Taniguchi; Masae Sato; Masaki Takanashi; Moe Yokemura; Yasunori Sato; Hiroshi Nishihara
Journal:  PLoS One       Date:  2022-05-12       Impact factor: 3.752

6.  SARS-CoV-2 Antigenemia as a Confounding Factor in Immunodiagnostic Assays: A Case Study.

Authors:  Konstantinos Belogiannis; Venetia A Florou; Paraskevi C Fragkou; Stefanos Ferous; Loukas Chatzis; Aikaterini Polyzou; Nefeli Lagopati; Demetrios Vassilakos; Christos Kittas; Athanasios G Tzioufas; Sotirios Tsiodras; George Sourvinos; Vassilis G Gorgoulis
Journal:  Viruses       Date:  2021-06-14       Impact factor: 5.048

Review 7.  The challenges of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) testing in low-middle income countries and possible cost-effective measures in resource-limited settings.

Authors:  Zamathombeni Duma; Anil A Chuturgoon; Veron Ramsuran; Vinodh Edward; Pragalathan Naidoo; Miranda N Mpaka-Mbatha; Khethiwe N Bhengu; Nomzamo Nembe; Roxanne Pillay; Ravesh Singh; Zilungile L Mkhize-Kwitshana
Journal:  Global Health       Date:  2022-01-22       Impact factor: 10.401

Review 8.  Sample pooling: burden or solution?

Authors:  Nadja Grobe; Alhaji Cherif; Xiaoling Wang; Zijun Dong; Peter Kotanko
Journal:  Clin Microbiol Infect       Date:  2021-04-18       Impact factor: 13.310

  8 in total

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