| Literature DB >> 33315052 |
Xiao-Wen Hou1, Ying Wang1, Chen-Wei Pan1.
Abstract
Purpose: Age-related macular degeneration (AMD) is one of the leading causes of blindness among the elderly, and the exact pathogenesis of the AMD remains unclear. The purpose of this review is to summarize potential metabolic biomarkers and pathways of AMD that might facilitate risk predictions and clinical diagnoses of AMD.Entities:
Year: 2020 PMID: 33315052 PMCID: PMC7735950 DOI: 10.1167/iovs.61.14.13
Source DB: PubMed Journal: Invest Ophthalmol Vis Sci ISSN: 0146-0404 Impact factor: 4.799
Figure 1.Flow diagram of literature search and study selection for metabolite markers of AMD.
Metabolomics Studies Analyzing Samples From Patients With AMD
| Biofluid | Source | Comparison | Targeted/Untargeted | Metabolomic Technique Used | Differential Metabolite Evaluation Method | References |
|---|---|---|---|---|---|---|
| Plasma | America | NVAMD patients (n = 100) and CP (n = 192) | Untargeted | LC-MS and LC-MS/MS | Nested feature selection | Mitchell et al. |
| Plasma | America | Early AMD, intermediate AMD, late AMD (n = 89) and CP (n = 30) | Targeted | UPLC-MS | Logistic regression analysis | Laíns et al. |
| Plasma | Two cohorts: the USA and Portugal | AMD patients (n = 391) and CP (n = 100) | Untargeted | UPLC-MS | Logistic regression models | Laíns et al. |
| Plasma | China | NVAMD patients (n = 20) and CP (n = 20) | Untargeted | UPLC-Q-TOF MS | PLS-DA, fold change analysis and | Luo et al. |
| Serum | European | Patients with non-advanced AMD (n = 72) and CP (n = 72) | Targeted | HPLC-MS | sPLS-DA | Kersten et al. |
| Plasma | America | NVAMD patients (n = 26) and CP (n = 19) | Untargeted | LC-FTMS | Multiple testing | Osborn et al. |
| Plasma | Two cohorts: the USA and Portugal | AMD patients (n = 201) and CP (n = 42)(Coimbra); AMD patients (n = 113) and CP (n = 40) (Boston) | Untargeted |
| PLS-DA | Laíns et al. |
| Serum | China | 21 PCV vs 19 CP | Untargeted | UPLC-MS | OPLS-DA | Li et al. |
| Urine | America | AMD patients (n = 252) and CP (n = 53) (Coimbra); AMD patients (n = 147) and CP (n = 47) (Boston) | Untargeted |
| PLS-DA | Laíns et al. |
| Plasma | France | Exudative-AMD patients (n = 40) and CP (n = 40) | Targeted | Mass spectrometry | Student's | Chao de la Barca et al. |
| Serum | China | AMD patients (n = 88), PCV patients (n = 102) and CP (n = 81) | Untargeted | GC-TOF/MS | OPLS-DA, Fold Change analysis and | Liu et al. |
| Aqueous humor | China | Wet AMD patients (n = 26) and CP (n = 20) | Untargeted | UHPLC-MS/MS | PLS-DA, OPLS-DA, and ANOVA | Han et al. |
| S & P | European | 2267 AMD cases and 4266 CP | Targeted | High-throughput | Logistic regression | Acar et al. |
S & P, serum and plasma; CP, control patients; PCV, polypoidal choroidal vasculopathy; LC, liquid chromatogram; UPLC, ultra-performance liquid chromatography; FTMS, Fourier-transform mass spectrometry; GC, gas chromatography; TOF, time of flight; Q-TOF, quadrupole-time of flight; PLS-DA, partial least squares discriminant analysis; OPLS-DA, orthogonal partial least squares discriminant analysis; ANOVA, one-way analysis of variance.
Metabolic Biomarkers Related to AMD
| Metabolite Name | HMDB ID | Hits | Biological Samples to Be Analyzed |
|---|---|---|---|
| Adenosine | HMDB0000050 | 2 | Plasma |
| Hypoxanthine | HMDB0000157 | 2 | Serum |
| Tyrosine | HMDB0000158 | 2 | Serum |
| Phenylalanine | HMDB0000159 | 3 | Serum |
| Creatine | HMDB0000064 | 2 | Plasma |
| Citrate | HMDB0000094 | 2 | Urine |
| Carnitine | HMDB0000062 | 2 | Plasma |
| Proline | HMDB0000162 | 2 | Plasma |
| Maltose | HMDB0000163 | 2 | Plasma |
AH, aqueous humor.
Classification/Prediction Potential of Biomarker Panels
| References | Biomarker Panel | Discriminant Model | Discriminant Group; Precision |
|---|---|---|---|
| Mitchell et al. | 159 differential features | SVM | Training set; balanced accuracy rate = 96.1% test set; balanced accuracy rate = 75.6%, AUC = 0.83 |
| Laíns et al. | 87 differential features | Logistic regression | Differential material modeling (AUC = 0.8) Only contains age, gender, BMI and smoking status (AUC = 0.71) |
| Laíns et al. | * | Logistic regression | Baseline model (AUC = 0.725; 95% CI:0.671–0.779) All-Met + EN model (AUC = 0.745; 95% CI:0.692–0.797) Stage + 2Eye model (AUC = 0.815; 95% CI: 0.771–0.860) AMD/Control model (AUC = 0.789; 95% CI: 0.738–0.840) |
| Kersten et al. | Glutamine (Glu:Gln ratio, glutaminolysis, and PC.aa.C28.1) | sPLS-DA | Glutamine, Glu:Gln ratio, glutaminolysis, and PC.aa.C28.1 (AUC of 0.71, 95% CI: 0.62–0.79) glutamine (AUC of 0.66, 95% CI: 0.57–0.75) |
| Li et al. | 41 differential features | AUC | LPA (18:2), LPC (20:4), PC (20:1p/19:1), SM (d16:0/22:2), PAF (35:4), PC (16:0/22:5) and PC (18:1/20:4) are evaluated separately, AUC ≥ 0.8 |
SVM, support vector machine; sPLS-DA, sparse partial least squares discriminant analysis; CI, confidence interval; BMI, body mass index; Glu:Gln ratio, the ratio between glutamine and glutamate.
*Baseline: baseline model including only demographic covariates; All-Met + EN: all metabolites plus elastic net model including baseline + metabolites selected using elastic net regression with all metabolites; AMD/Control: AMD/Control model including baseline + metabolites identified in the logistic regression; Stage + 2Eye: stage + 2eye model including baseline + metabolites identified in the permutation-based cumulative logistic regression.
Figure 2.Results of the pathway analysis of metabolic biomarkers of AMD (circle color indicates significance level in the enrichment analysis, and circle size reflects pathway impact value from the topology analysis).
Results of the Pathway Analysis of Metabolic Biomarkers
| Pathway Name | Match Status |
| FDR | Impact |
|---|---|---|---|---|
| Aminoacyl-tRNA biosynthesis | 11/48 | 7.59E-06 | 6.37E-04 | 0.00000 |
| Phenylalanine, tyrosine and tryptophan biosynthesis | 3/4 | 4.04E-04 | 0.01698 | 1.00000 |
| Alanine, aspartate and glutamate metabolism | 6/28 | 0.00157 | 0.04406 | 0.33974 |
| Glyoxylate and dicarboxylate metabolism | 6/32 | 0.00325 | 0.05595 | 0.05556 |
| Arginine biosynthesis | 4/14 | 0.00333 | 0.05595 | 0.07614 |
| Glycerophospholipid metabolism | 6/36 | 0.00600 | 0.08396 | 0.38978 |
| Citrate cycle (TCA cycle) | 4/20 | 0.01296 | 0.15552 | 0.21656 |
| Sphingolipid metabolism | 4/21 | 0.01544 | 0.16212 | 0.21704 |
| Lysine degradation | 4/25 | 0.02825 | 0.26366 | 0.00469 |
| Nicotinate and nicotinamide metabolism | 3/15 | 0.03142 | 0.26391 | 0.19430 |
| Tyrosine metabolism | 5/42 | 0.04629 | 0.33754 | 0.24711 |
FDR, false discovery rate.