Literature DB >> 3331348

Implications for enzymic catalysis from free-energy reaction coordinate profiles.

C A Fierke1, R D Kuchta, K A Johnson, S J Benkovic.   

Abstract

The constraints on the internal ground and transition states of enzyme-bound intermediates are mandated by the overall free-energy change in the direction of flux (Chin 1983; Stackhouse et al. 1985; Raines 1986) and the barrier for combination with reagent. Within these confines there are many solutions to transit the reaction coordinate. The path taken may reflect the function of the enzyme in question; particularly, whether in addition to catalysis there is a need to optimize reaction accuracy (Cramer and Freist 1987), to perform mechanochemical coupling (Jencks 1980), or to create metabolic control (Newsholme and Crabtree 1981; Koshland 1984).

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Year:  1987        PMID: 3331348     DOI: 10.1101/sqb.1987.052.01.072

Source DB:  PubMed          Journal:  Cold Spring Harb Symp Quant Biol        ISSN: 0091-7451


  5 in total

1.  One site fits both: a model for the ternary complex of folate + NADPH in R67 dihydrofolate reductase, a D2 symmetric enzyme.

Authors:  E E Howell; U Shukla; S N Hicks; R D Smiley; L A Kuhn; M I Zavodszky
Journal:  J Comput Aided Mol Des       Date:  2001-11       Impact factor: 3.686

2.  Temperature dependence of protein motions in a thermophilic dihydrofolate reductase and its relationship to catalytic efficiency.

Authors:  Olayinka A Oyeyemi; Kevin M Sours; Thomas Lee; Katheryn A Resing; Natalie G Ahn; Judith P Klinman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-13       Impact factor: 11.205

3.  An enzyme-coupled assay measuring acetate production for profiling histone deacetylase specificity.

Authors:  Noah A Wolfson; Carol Ann Pitcairn; Eric D Sullivan; Caleb G Joseph; Carol A Fierke
Journal:  Anal Biochem       Date:  2014-03-25       Impact factor: 3.365

4.  Computational Development of Inhibitors of Plasmid-Borne Bacterial Dihydrofolate Reductase.

Authors:  Pedro J Silva
Journal:  Antibiotics (Basel)       Date:  2022-06-07

5.  Divergent evolution of protein conformational dynamics in dihydrofolate reductase.

Authors:  Gira Bhabha; Damian C Ekiert; Madeleine Jennewein; Christian M Zmasek; Lisa M Tuttle; Gerard Kroon; H Jane Dyson; Adam Godzik; Ian A Wilson; Peter E Wright
Journal:  Nat Struct Mol Biol       Date:  2013-09-29       Impact factor: 15.369

  5 in total

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