Literature DB >> 33312749

Nuclear Waste and Biocatalysis: A Sustainable Liaison?

Wuyuan Zhang1,2, Huanhuan Liu3, Morten M C H van Schie1, Peter-Leon Hagedoorn1, Miguel Alcalde4, Antonia G Denkova3, Kristina Djanashvili1, Frank Hollmann1.   

Abstract

It is well-known that energy-rich radiation induces water splitting, eventually yielding hydrogen peroxide. Synthetic applications, however, are scarce and to the best of our knowledge, the combination of radioactivity with enzyme-catalysis has not been considered yet. Peroxygenases utilize H2O2 as an oxidant to promote highly selective oxyfunctionalization reactions but are also irreversibly inactivated in the presence of too high H2O2 concentrations. Therefore, there is a need for efficient in situ H2O2 generation methods. Here, we show that radiolytic water splitting can be used to promote specific biocatalytic oxyfunctionalization reactions. Parameters influencing the efficiency of the reaction and current limitations are shown. Particularly, oxidative inactivation of the biocatalyst by hydroxyl radicals influences the robustness of the overall reaction. Radical scavengers can alleviate this issue, but eventually, physical separation of the enzymes from the ionizing radiation will be necessary to achieve robust reaction schemes. We demonstrate that nuclear waste can also be used to drive selective, peroxygenase-catalyzed oxyfunctionalization reactions, challenging our view on nuclear waste in terms of sustainability.
© 2020 American Chemical Society.

Entities:  

Year:  2020        PMID: 33312749      PMCID: PMC7723303          DOI: 10.1021/acscatal.0c03059

Source DB:  PubMed          Journal:  ACS Catal            Impact factor:   13.084


It is known since decades that radiolytic splitting of water results in the formation of various radicals, which eventually form H2O2 and H2.[1] Interestingly, with the exception of radical-initiated polymerization of vinyl monomers[2,3] or hydrogen production,[4] this reaction has not yet caught the attention of organic chemists. Particularly, hydrogen peroxide could be used to drive a broad range of catalytic oxidation reactions.[5] Peroxygenases (UPOs, E.C. 1.11.2.1), for example, are a class of enzymes catalyzing a broad range of specific, H2O2-dependent oxyfunctionalization reactions ranging from the hydroxylation of aromatic and aliphatic C–H-bonds, epoxidation of C=C-bonds, and oxygenation of heteroatoms.[6−8] For this, peroxygenases utilize a heme prosthetic group, which in the presence of H2O2 is transformed into an oxo-ferryl species (Compound I) mediating the oxyfunctionalization reaction (Scheme ).[7] Utilizing this “H2O2 shunt pathway”, peroxygenases are independent from the complex electron transport chains utilized by P450 monooxygenases to form Cpd I via reductive activation of O2.[9−12]
Scheme 1

Peroxygenase Mechanism in a Nutshell; the Resting FeIII–Heme Prosthetic Group Reacts with H2O2 to Form Compound I (Cpd I, FeIVOxo–Heme Radical Cation); the Latter can Insert the Activated O Atom Into C–H Bonds[7]

In the presence of too high concentrations of H2O2, however, peroxygenases are also irreversibly inactivated.[13−15] To alleviate this issue, a range of in situ H2O2 generation systems have been developed, mostly comprising catalytic reduction of H2O2.[13] These systems can be categorized by the sacrificial reductant used (Table S1). The well-known glucose oxidase system,[16,17] for example, transforms glucose into gluconic acid, thereby yielding more than 190 g of waste per mol H2O2 generated. Formic acid,[18] methanol,[19−21] H2,[22] or electrochemical power[23−26] are more attractive from the atom economy point of view. Water oxidation[27−29] appears most appealing as here, the atom efficiency is the highest. In this context, the radiolytic formation of H2O2 may represent an interesting alternative method (Figure a).
Figure 1

Radiolytic H2O2 formation. (a) Schematic physicochemical and chemical steps involved in radiolytic H2O2 formation and H2O2 decomposition;[30] (b) H2O2 concentration in aqueous phosphate buffer (100 mM, pH 7, T = 22 °C) exposed to a 60Co-radiolysis source (12.9 Gy min–1). (▲): [H2O2]0 = 0 mM, (○): [H2O2]0 = 0.5 mM. Error bars indicate the standard deviation of duplicate experiments (n = 2).

Radiolytic H2O2 formation. (a) Schematic physicochemical and chemical steps involved in radiolytic H2O2 formation and H2O2 decomposition;[30] (b) H2O2 concentration in aqueous phosphate buffer (100 mM, pH 7, T = 22 °C) exposed to a 60Co-radiolysis source (12.9 Gy min–1). (▲): [H2O2]0 = 0 mM, (○): [H2O2]0 = 0.5 mM. Error bars indicate the standard deviation of duplicate experiments (n = 2). As a radiation source, we used an external gamma radiation source 60Co, which is widely applied, for example, in radiotherapy (i.e., gamma knife) and sterilization. Indeed, an aqueous buffer placed next to the radiation source steadily accumulated H2O2 up to 0.1 mM at which the H2O2 concentration plateaued (in the case of a dose rate of 12.9 Gy min–1) (Figure b). In another experiment, we presupplemented the buffer with 0.5 mM H2O2 and observed a steady decrease in the H2O2 concentration to approximately 0.1 mM (Figure b). Apparently, the constant H2O2 concentration was the result of a steady state between H2O splitting (yielding H2O2) and radiolysis-based splitting of H2O2 (yielding H2O and O2).[31] The position of the steady state depended on the intensity (i.e., dose rate) of the radiation source (Figure S1). Next, we combined the 60Co-induced water radiolysis with a UPO-catalyzed hydroxylation reaction. As a model reaction, we used the selective hydroxylation of ethyl benzene to (R)-1-phenyl ethanol catalyzed by the recombinant, evolved peroxygenase from Agrocybe aegerita (rAaeUPO).[32−34] To confirm that the overall reaction followed the mechanism outlined in Figure a, a range of control reactions were executed: performing the reaction either in the absence or using thermally inactivated rAaeUPO yielded no product formation, while in the presence of rAaeUPO, enantiomerically pure (>99% ee) (R)-1-phenyl ethanol was formed. The presence or absence of molecular oxygen had no obvious influence on the product formation rate. Furthermore, performing the reaction in H218O-enriched buffer resulted in the formation of 18O-labeled (R)-1-phenyl ethanol (Figure b,c). This confirms that indeed the reaction medium serves as a source of H2O2 and that reduction of O2 (from ambient air) played a minor role in the H2O2 formation.
Figure 2

Selective hydroxylation of ethyl benzene to (R)-1-phenyl ethanol using rAaeUPO and radiolysis-derived H2O2: (a) reaction scheme; (b) turnover numbers (TN = moles( × molesr–1): (blue): standard reaction ([rAaeUPO] = 200 nM, [substrate] = 5 mM); (red): w/o O2 (using deaerated reaction mixtures); (green): in H218O (under aerobic conditions but using 18O-enriched water); (violet): ΔT(rAaeUPO) (using a thermally inactivated biocatalyst); (c) GC/MS analysis of the reaction product ((R)-1-phenyl ethanol) obtained from the reaction in 18O-enriched water (upper) and under standard conditions (lower). Error bars indicate the standard deviation of duplicate experiments (n = 2).

Selective hydroxylation of ethyl benzene to (R)-1-phenyl ethanol using rAaeUPO and radiolysis-derived H2O2: (a) reaction scheme; (b) turnover numbers (TN = moles( × molesr–1): (blue): standard reaction ([rAaeUPO] = 200 nM, [substrate] = 5 mM); (red): w/o O2 (using deaerated reaction mixtures); (green): in H218O (under aerobic conditions but using 18O-enriched water); (violet): ΔT(rAaeUPO) (using a thermally inactivated biocatalyst); (c) GC/MS analysis of the reaction product ((R)-1-phenyl ethanol) obtained from the reaction in 18O-enriched water (upper) and under standard conditions (lower). Error bars indicate the standard deviation of duplicate experiments (n = 2). (R)-1-phenyl ethanol was the sole product observed, indicating that the selectivity of the biocatalyst was not impaired under the reaction conditions, particularly by the radioactivity. A control reaction with (R)-1-phenyl ethanol only under the irradiation showed that radiation-induced further oxidation of the primary enzyme product ((R)-1-phenyl ethanol to acetophenone) can be ruled out. Next, we further investigated some factors influencing the efficiency and robustness of the overall reaction (Figure ). Increasing the biocatalyst concentration increased the product formation within the first hour (Figure a). This increase, however, was not linear and converged to approx. 0.25 mM h–1 at rAaeUPO concentrations above 100 nM. Interestingly, this product formation rate was approx. twofold higher than the H2O2 accumulation rate observed in the absence of the biocatalysts (Figure b). This observation can be attributed to the irreversible peroxygenase step removing H2O2 from the steady-state equilibrium. A respectable turnover number for the biocatalyst (TN = molesProduct × molesCatalyst–1) of more than 1400 was observed for the biocatalyst.
Figure 3

(a) Influence of the biocatalyst concentration on the “initial” product formation within the first hour of reaction; (b) influence of various radical scavenger molecules (50 mM each) on the product formation after 1 h reaction time; (c) comparison of the time courses of the radioenzymatic hydroxylation in the absence of radical scavengers (blue ●) or in the presence of methanol (red ⬤, 50 mM) or sodium formate (green ●, 50 mM). Reaction conditions: [substrate] = 2 mM, [rAaeUPO] = 50 nM (b,c), NaPi, pH 7.0 (60 mM), T = 22 °C, t = 1 h (a,b). The dose rate was 12.9 Gy min–1. Error bars indicate the standard deviation of duplicate experiments (n = 2).

(a) Influence of the biocatalyst concentration on the “initial” product formation within the first hour of reaction; (b) influence of various radical scavenger molecules (50 mM each) on the product formation after 1 h reaction time; (c) comparison of the time courses of the radioenzymatic hydroxylation in the absence of radical scavengers (blue ●) or in the presence of methanol (red ⬤, 50 mM) or sodium formate (green ●, 50 mM). Reaction conditions: [substrate] = 2 mM, [rAaeUPO] = 50 nM (b,c), NaPi, pH 7.0 (60 mM), T = 22 °C, t = 1 h (a,b). The dose rate was 12.9 Gy min–1. Error bars indicate the standard deviation of duplicate experiments (n = 2). These experiments, however, also revealed a poor long-term stability of the enzyme under the reaction conditions. Already after 1 h of reaction (approx. 770 Gy under the dose rate of 12.9 Gy min–1), the product formation ceased, which we interpreted as loss of enzyme activity (Figure S2). This assumption is supported by a considerable decrease in the characteristic Soret peak at 419 nm indicative for an intact heme moiety (Figure S3). Analysis of an inactivated enzyme sample by native gel electrophoresis gave no indication for loss of the quaternary structure (Figure S4). We reasoned that hydroxyl radicals formed during the physicochemical phase of the water radiolysis reaction, for example, the hydroxyl radicals, may oxidatively inactivate the catalytic heme functionality and thereby the biocatalyst. Of course, also H2O2-dependent inactivation of the prosthetic group can also contribute to the observed inactivation. However, also the highly H2O2-stable,[35] V-dependent chloroperoxidase from Curvularia inaequalis (CiVCPO)[36] was inactivated under these conditions (vide infra). Suspecting intermediate radical species (Figure a) as major contributors to the observed biocatalyst inactivation, we tested a range of different radical scavengers (Figure b). Among these radical scavengers especially methanol, acrylamide, and formate enabled significantly increased product formation (Figure b). The effect depended on the concentration of the radical scavenger as exemplified with methanol and formate (Figures S5 and S6). We therefore also compared the time courses of the radioenzymatic reactions in the absence and presence of the radical scavengers methanol and formate (Figure c). Most strikingly, the conversion of ethyl benzene to (R)-1-phenyl ethanol was increased from approx. 18%, in the case of reactions in the absence of radical scavengers, to full conversion, in the presence of sodium formate. In the latter case, a turnover number for the biocatalyst of 40.000 was achieved, which we ascribe to a higher enzyme stability because of a decreased concentration of hydroxyl radicals. This assumption was also supported by electron paramagnetic resonance experiments, which revealed that in the presence of both methanol or formate, the in situ •OH concentration was significantly reduced (Figures S7 and S8). The dose rate of the radiation source directly influenced the product formation of the radioenzymatic reaction system (Table ). The final product concentration (and directly related to this also the turnover number of the enzyme) directly correlated with the dose rate of the radioactivity source applied. Interestingly, the “radiation yield”, that is, the amount of product formed per Gy, correlated inversely with the dose rate. This may be due to a decreased radiolytic H2O2 decomposition at lower dose rates, whereas the biocatalyst concentration remained constant. Further experiments will be necessary to fully rationalize this observation. Pleasantly, the reactions performed with spent fuel element (235U) also showed good robustness.
Table 1

Radioenzymatic Hydroxylation of Ethyl Benzene Using Different Radiation Sourcesa

radiation sourceb60Co-160Co-2235U
dose rate [Gy min–1]12.91.01.67
(R)-1-phenyl ethanol [mM]0.910.290.39
ee [%]>99>99>99
TONrAaeUPOc18,20058007800
radiation yield [μMproduct × Gy–1]d0.1960.8060.659

General reaction conditions: sodium phosphate buffer (60 mM, pH 7), [ethyl benzene] = 1 mM, [rAaeUPO] = 50 nM, [sodium formate] = 50 mM, T = 22 °C, t = 6 h.

Three different radiation sources were used: 60Co-1 and -2 exhibiting dose rates of 12.9 and 1 Gy min–1, respectively, and 235U (from a spent fuel element) with 1.67 Gy min–1.

TONr = molesProduct × molesr–1.

Radiation yield = product concentration × (dose rate × reaction time)−1.

General reaction conditions: sodium phosphate buffer (60 mM, pH 7), [ethyl benzene] = 1 mM, [rAaeUPO] = 50 nM, [sodium formate] = 50 mM, T = 22 °C, t = 6 h. Three different radiation sources were used: 60Co-1 and -2 exhibiting dose rates of 12.9 and 1 Gy min–1, respectively, and 235U (from a spent fuel element) with 1.67 Gy min–1. TONr = molesProduct × molesr–1. Radiation yield = product concentration × (dose rate × reaction time)−1. Finally, we initially explored the substrate scope of the proposed radioenzymatic reaction scheme (Figure ). For this, some further oxyfunctionalization reactions reported for rAaeUPO, such as epoxidation[37] as well as aliphatic[38] and aromatic hydroxylation reactions, were chosen.[39,40] With the exception of the epoxidation of cis-ß-methyl styrene, where the optical purity of the epoxide product was somewhat lower than reported, the regio- and enantioselectivity of the biocatalyst was not impaired under the reaction conditions and essentially identical results compared to previous experiments with this enzyme using alternative H2O2 generation methods were observed. Possibly, the radicals present in the reaction mixture lead to racemization of the epoxide product, but further investigations will be necessary to confirm this. Again, a beneficial effect of formate on the product formation was observed (Figure ).
Figure 4

Preliminary product scope of the proposed radioenzymatic reactions. (a) Specific oxyfunctionalization reactions catalyzed by rAaeUPO; (b) CiVCPO-catalyzed hydroxybromination reactions. Reaction results shown in black originate from reactions in the absence of formate, whereas results shown in green stem from reactions performed (under otherwise identical conditions) in the presence of 50 mM NaHCO2. Reaction conditions: General: the dose rate in each experiment was 12.9 Gy min–1, T = 22 °C, t = 6 h, experiments were performed as duplicates; (a) [substrate] = 1 mM, buffer: NaPi buffer (50 mM, pH 7) except for the reaction of tridecanoic acid (50 mM Tris-HCl, pH 8), 30% (v/v) MeCN as cosolvent, [rAaeUPO] = 50 nM, (b) [substrate] = 1 mM, buffer: citrate buffer (100 mM, pH 5), [CiVCPO] = 50 nM, [NaBr] = 5 mM.

Preliminary product scope of the proposed radioenzymatic reactions. (a) Specific oxyfunctionalization reactions catalyzed by rAaeUPO; (b) CiVCPO-catalyzed hydroxybromination reactions. Reaction results shown in black originate from reactions in the absence of formate, whereas results shown in green stem from reactions performed (under otherwise identical conditions) in the presence of 50 mM NaHCO2. Reaction conditions: General: the dose rate in each experiment was 12.9 Gy min–1, T = 22 °C, t = 6 h, experiments were performed as duplicates; (a) [substrate] = 1 mM, buffer: NaPi buffer (50 mM, pH 7) except for the reaction of tridecanoic acid (50 mM Tris-HCl, pH 8), 30% (v/v) MeCN as cosolvent, [rAaeUPO] = 50 nM, (b) [substrate] = 1 mM, buffer: citrate buffer (100 mM, pH 5), [CiVCPO] = 50 nM, [NaBr] = 5 mM. To address the question whether too high H2O2 concentrations may contribute to the abovementioned inactivation of rAaeUPO, we extended the enzyme scope of the proposed radioenzymatic reaction to the vanadium-dependent chloroperoxidase from C. inaequalis (CiVCPO).[36]CiVCPO exhibits superb stability even in the presence of up to 100 mM.[35] Using CiVCPO as a catalyst to the hydroxybromination of styrene[41] and the bromolactonization of 4-pentenoic acid,[42,43] significant product accumulation was observed. The turnover numbers achieved for the biocatalyst (>4000), however, fell back behind the numbers observed previously. As H2O2 as a cause for this can be ruled out, we assign this observation to CiVCPO inactivation by hydroxyl radicals (Figure S9). In conclusion, we have demonstrated that radiolytic water splitting can be used to promote biocatalytic oxyfunctionalization reactions. H2O2 formed as a consequence of γ-irradiation of the reaction mixture enabled “donor-independent” H2O2 generation from water. The dose-rate-dependent steady-state concentration appears ideal to provide heme-dependent peroxygenases with suitable concentrations of H2O2 that enable the reaction while minimizing the oxidative inactivation. This advantage, at least in the present setup, is compensated by the radical-induced inactivation of the biocatalyst, this is also reflected by the comparably poor performance of the present system compared to other in situ H2O2 generation systems (Table S1). Compared with (enzymatic) H2O2 generation systems (which largely avoid the intermediate occurrence of radical species), the peroxygenases’ turnover numbers fall back approx. 10-fold. Compared to other (radical-generating) H2O2 generation systems, the turnover numbers observed here compare very well. The radical inactivation of the biocatalysts represents an apparent shortcoming of the current setup. In future experiments, we will address this by physical separation of the biocatalyst from the radiation source. Flow chemistry appears a particularly attractive technical solution. Although this approach at first sight may appear as a lab curiosity, we believe that it may actually bear some practical relevance. In this study, we have demonstrated that spent fuel elements can drive peroxygenase-catalyzed reactions. Considering the annually increasing amounts of radioactive waste and its persistence, the proposed radioenzymatic approach may represent a possibility to productively utilize nuclear waste. Furthermore, it should be kept in mind that globally a variety of different radiation sources are used commercially. For instance, 60Co units are used for sterilization and electron beams for various applications and research nuclear reactors (more than 250 worldwide).

Experimental Section

Production of the Biocatalysts

The evolved, unspecific peroxygenase from Agrocybe aegrita (rAaeUPO) was obtained from fermentation of recombinant Pichia pastoris as previously described.[33,34] The culture broth containing rAaeUPO in the supernatant was clarified by centrifugation followed by ultrafiltration and filtered through a 20 μm filter. The enzyme preparation was stored at −80 °C until further use. The vanadium-dependent chloroperoxidase from C. inaequalis (CiVCPO) was produced by recombinant expression in Escherichia coli as described previously.[35] The crude cell extracts were treated with isopropanol (50% v/v) to precipitate nucleic acids and endogeneous E. coli proteins. The clarified supernatant was supplemented with (NH4)2VO4 (100 μMfinal) to reconstitute the holoenzyme.

Radiochemical Experiments

All radiochemical experiments were performed by placing 2 mL GC vials filled with 1 mL of the reaction mixture next to the radioactivity source (Figure S10). All reactions were performed at ambient temperature (22 °C). At intervals, samples were removed from the radiation source and analyzed. For H2O2 quantification, we used using Ghormley’s triiodide method.[44] For the analysis of the radioenzymatic reactions, the reaction mixtures were further processed and analyzed by GC or HPLC as described previously.[21,45,46]
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