Literature DB >> 33311509

A partially self-regenerating synthetic cell.

Barbora Lavickova1, Nadanai Laohakunakorn2, Sebastian J Maerkl3.   

Abstract

Self-regeneration is a fundamental function of all living systems. Here we demonstrate partial molecular self-regeneration in a synthetic cell. By implementing a minimal transcription-translation system within microfluidic reactors, the system is able to regenerate essential protein components from DNA templates and sustain synthesis activity for over a day. By quantitating genotype-phenotype relationships combined with computational modeling we find that minimizing resource competition and optimizing resource allocation are both critically important for achieving robust system function. With this understanding, we achieve simultaneous regeneration of multiple proteins by determining the required DNA ratios necessary for sustained self-regeneration. This work introduces a conceptual and experimental framework for the development of a self-replicating synthetic cell.

Entities:  

Year:  2020        PMID: 33311509     DOI: 10.1038/s41467-020-20180-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  44 in total

1.  Synthesizing life.

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3.  Liquid-liquid phase separation in artificial cells.

Authors:  Charles D Crowe; Christine D Keating
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4.  Light-powered CO2 fixation in a chloroplast mimic with natural and synthetic parts.

Authors:  Tarryn E Miller; Thomas Beneyton; Thomas Schwander; Christoph Diehl; Mathias Girault; Richard McLean; Tanguy Chotel; Peter Claus; Niña Socorro Cortina; Jean-Christophe Baret; Tobias J Erb
Journal:  Science       Date:  2020-05-08       Impact factor: 47.728

5.  Spontaneous emergence of cell-like organization in Xenopus egg extracts.

Authors:  Xianrui Cheng; James E Ferrell
Journal:  Science       Date:  2019-11-01       Impact factor: 47.728

Review 6.  Towards synthesis of a minimal cell.

Authors:  Anthony C Forster; George M Church
Journal:  Mol Syst Biol       Date:  2006-08-22       Impact factor: 11.429

7.  Self-replication of DNA by its encoded proteins in liposome-based synthetic cells.

Authors:  Pauline van Nies; Ilja Westerlaken; Duco Blanken; Margarita Salas; Mario Mencía; Christophe Danelon
Journal:  Nat Commun       Date:  2018-04-20       Impact factor: 14.919

8.  Artificial photosynthetic cell producing energy for protein synthesis.

Authors:  Samuel Berhanu; Takuya Ueda; Yutetsu Kuruma
Journal:  Nat Commun       Date:  2019-03-22       Impact factor: 14.919

9.  Shape and Size Control of Artificial Cells for Bottom-Up Biology.

Authors:  Federico Fanalista; Anthony Birnie; Renu Maan; Federica Burla; Kevin Charles; Grzegorz Pawlik; Siddharth Deshpande; Gijsje H Koenderink; Marileen Dogterom; Cees Dekker
Journal:  ACS Nano       Date:  2019-05-16       Impact factor: 15.881

10.  Towards synthetic cells using peptide-based reaction compartments.

Authors:  Kilian Vogele; Thomas Frank; Lukas Gasser; Marisa A Goetzfried; Mathias W Hackl; Stephan A Sieber; Friedrich C Simmel; Tobias Pirzer
Journal:  Nat Commun       Date:  2018-09-21       Impact factor: 14.919

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  8 in total

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Review 2.  Biochemistry of Aminoacyl tRNA Synthetase and tRNAs and Their Engineering for Cell-Free and Synthetic Cell Applications.

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Journal:  Front Bioeng Biotechnol       Date:  2022-07-01

3.  Complex dynamics in a synchronized cell-free genetic clock.

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Journal:  Nat Commun       Date:  2022-05-23       Impact factor: 17.694

Review 4.  Modularize and Unite: Toward Creating a Functional Artificial Cell.

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Journal:  Front Mol Biosci       Date:  2021-11-29

5.  In vitro reconstitution of the Escherichia coli 70S ribosome with a full set of recombinant ribosomal proteins.

Authors:  Ryo Aoyama; Keiko Masuda; Masaru Shimojo; Takashi Kanamori; Takuya Ueda; Yoshihiro Shimizu
Journal:  J Biochem       Date:  2022-02-21       Impact factor: 3.387

6.  Signal processing and generation of bioactive nitric oxide in a model prototissue.

Authors:  Songyang Liu; Yanwen Zhang; Xiaoxiao He; Mei Li; Jin Huang; Xiaohai Yang; Kemin Wang; Stephen Mann; Jianbo Liu
Journal:  Nat Commun       Date:  2022-09-06       Impact factor: 17.694

7.  Phospholipid synthesis inside phospholipid membrane vesicles.

Authors:  Sumie Eto; Rumie Matsumura; Yasuhiro Shimane; Mai Fujimi; Samuel Berhanu; Takeshi Kasama; Yutetsu Kuruma
Journal:  Commun Biol       Date:  2022-09-27

Review 8.  Connecting primitive phase separation to biotechnology, synthetic biology, and engineering.

Authors:  Tony Z Jia; Po-Hsiang Wang; Tatsuya Niwa; Irena Mamajanov
Journal:  J Biosci       Date:  2021       Impact factor: 1.826

  8 in total

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