Literature DB >> 33306124

Genetics-first approach improves diagnostics of ESKD patients <50 years old.

Rozemarijn Snoek1, Richard H van Jaarsveld1, Tri Q Nguyen2, Edith D J Peters1, Martin G Elferink1, Robert F Ernst1, Maarten B Rookmaaker3, Marc R Lilien4, Eric Spierings5, Roel Goldschmeding2, Nine V A M Knoers1, Bert van der Zwaag1, Arjan D van Zuilen3, Albertien M van Eerde1.   

Abstract

BACKGROUND: Often only chronic kidney disease (CKD) patients with high likelihood of genetic disease are offered genetic testing. Early genetic testing could obviate the need for kidney biopsies, allowing for adequate prognostication and treatment. To test the viability of a 'genetics-first' approach for CKD, we performed genetic testing in a group of kidney transplant recipients aged <50 years, irrespective of cause of transplant.
METHODS: From a cohort of 273 transplant patients, we selected 110 that were in care in the University Medical Center Utrecht, had DNA available and were without clear-cut non-genetic disease. Forty patients had been diagnosed with a genetic disease prior to enrollment; in 70 patients, we performed a whole-exome sequencing-based 379 gene panel analysis.
RESULTS: Genetic analysis yielded a diagnosis in 51%. Extrapolated to the 273 patient cohort, who did not all fit the inclusion criteria, the diagnostic yield was still 21%. Retrospectively, in 43% of biopsied patients, the kidney biopsy would not have had added diagnostic value if genetic testing had been performed as a first-tier diagnostic.
CONCLUSIONS: The burden of monogenic disease in transplant patients with end-stage kidney disease (ESKD) of any cause prior to the age of 50 years is between 21% and 51%. Early genetic testing can provide a non-invasive diagnostic, impacting prognostication and treatment, and obviating the need for an invasive biopsy. We conclude that in patients who expect to develop ESKD prior to the age of 50 years, genetic testing should be considered as first mode of diagnostics.
© The Author(s) 2020. Published by Oxford University Press on behalf of the ERA.

Entities:  

Keywords:  chronic kidney disease; genetics; kidney biopsy; kidney transplant

Mesh:

Year:  2022        PMID: 33306124     DOI: 10.1093/ndt/gfaa363

Source DB:  PubMed          Journal:  Nephrol Dial Transplant        ISSN: 0931-0509            Impact factor:   5.992


  9 in total

1.  Clinical versus research genomics in kidney disease.

Authors:  Andrew J Mallett; Nine Knoers; John Sayer; Zornitza Stark
Journal:  Nat Rev Nephrol       Date:  2021-05-06       Impact factor: 28.314

2.  Reverse phenotyping facilitates disease allele calling in exome sequencing of patients with CAKUT.

Authors:  Steve Seltzsam; Chunyan Wang; Bixia Zheng; Nina Mann; Dervla M Connaughton; Chen-Han Wilfred Wu; Sophia Schneider; Luca Schierbaum; Franziska Kause; Caroline M Kolvenbach; Makiko Nakayama; Rufeng Dai; Isabel Ottlewski; Ronen Schneider; Konstantin Deutsch; Florian Buerger; Verena Klämbt; Youying Mao; Ana C Onuchic-Whitford; Camille Nicolas-Frank; Kirollos Yousef; Dalia Pantel; Ethan W Lai; Daanya Salmanullah; Amar J Majmundar; Stuart B Bauer; Nancy M Rodig; Michael J G Somers; Avram Z Traum; Deborah R Stein; Ankana Daga; Michelle A Baum; Ghaleb H Daouk; Velibor Tasic; Hazem S Awad; Loai A Eid; Sherif El Desoky; Mohammed Shalaby; Jameela A Kari; Hanan M Fathy; Neveen A Soliman; Shrikant M Mane; Shirlee Shril; Michael A Ferguson; Friedhelm Hildebrandt
Journal:  Genet Med       Date:  2021-11-30       Impact factor: 8.864

3.  Genetic Etiologies for Chronic Kidney Disease Revealed through Next-Generation Renal Gene Panel.

Authors:  Anthony J Bleyer; Maggie Westemeyer; Jing Xie; Michelle S Bloom; Katya Brossart; Jason J Eckel; Frederick Jones; Miklos Z Molnar; Wayne Kotzker; Prince Anand; Stanislav Kmoch; Yuan Xue; Samuel Strom; Sumit Punj; Zachary P Demko; Hossein Tabriziani; Paul R Billings; Trudy McKanna
Journal:  Am J Nephrol       Date:  2022-03-24       Impact factor: 4.605

Review 4.  Emerging Role of Clinical Genetics in CKD.

Authors:  Prasad Devarajan; Glenn M Chertow; Katalin Susztak; Adeera Levin; Rajiv Agarwal; Peter Stenvinkel; Arlene B Chapman; Bradley A Warady
Journal:  Kidney Med       Date:  2022-02-11

5.  Diagnostic yield of massively parallel sequencing in patients with chronic kidney disease of unknown etiology: rationale and design of a national prospective cohort study.

Authors:  Amber de Haan; Mark Eijgelsheim; Liffert Vogt; Bert van der Zwaag; Albertien M van Eerde; Nine V A M Knoers; Martin H de Borst
Journal:  BMJ Open       Date:  2022-04-07       Impact factor: 2.692

6.  The HIDDEN Protocol: An Australian Prospective Cohort Study to Determine the Utility of Whole Genome Sequencing in Kidney Failure of Unknown Aetiology.

Authors:  Jacqueline Soraru; Sadia Jahan; Catherine Quinlan; Cas Simons; Louise Wardrop; Rosie O'Shea; Alasdair Wood; Amali Mallawaarachchi; Chirag Patel; Zornitza Stark; Andrew John Mallett
Journal:  Front Med (Lausanne)       Date:  2022-05-26

Review 7.  The Evolving Role of Diagnostic Genomics in Kidney Transplantation.

Authors:  Jacqueline Soraru; Aron Chakera; Nikky Isbel; Amali Mallawaarachichi; Natasha Rogers; Peter Trnka; Chirag Patel; Andrew J Mallett
Journal:  Kidney Int Rep       Date:  2022-05-25

Review 8.  The term CAKUT has outlived its usefulness: the case for the defense.

Authors:  Nine V A M Knoers
Journal:  Pediatr Nephrol       Date:  2022-07-22       Impact factor: 3.651

9.  Genetic testing in the diagnosis of chronic kidney disease: recommendations for clinical practice.

Authors:  Nine Knoers; Corinne Antignac; Carsten Bergmann; Karin Dahan; Sabrina Giglio; Laurence Heidet; Beata S Lipska-Ziętkiewicz; Marina Noris; Giuseppe Remuzzi; Rosa Vargas-Poussou; Franz Schaefer
Journal:  Nephrol Dial Transplant       Date:  2022-01-25       Impact factor: 5.992

  9 in total

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