Ning Kon1, Yang Ou1, Shang-Jui Wang1, Huan Li1, Anil K Rustgi2, Wei Gu1,2. 1. Institute for Cancer Genetics, Department of Pathology and Cell Biology, Columbia University, New York, New York 10032, USA. 2. Herbert Irving Comprehensive Cancer Center, College of Physicians and Surgeons, Columbia University, New York, New York 10032, USA.
Abstract
Here, we showed that the acetylation-defective p53-4KR mice, lacking the ability of cell cycle arrest, senescence, apoptosis, and ferroptosis, were tumor prone but failed to develop early-onset tumors. By identifying a novel p53 acetylation site at lysine K136, we found that simultaneous mutations at all five acetylation sites (p53-5KR) diminished its remaining tumor suppression function. Moreover, the embryonic lethality caused by the deficiency of mdm2 was fully rescued in the background of p535KR/5KR , but not p534KR/4KR background. p53-4KR retained the ability to suppress mTOR function but this activity was abolished in p53-5KR cells. Notably, the early-onset tumor formation observed in p535KR/5KR and p53-null mice was suppressed upon the treatment of the mTOR inhibitor. These results suggest that p53-mediated mTOR regulation plays an important role in both embryonic development and tumor suppression, independent of cell cycle arrest, senescence, apoptosis, and ferroptosis.
Here, we showed that the acetylation-defective p53-4KR mice, lacking the ability of cell cycle arrest, senescence, apoptosis, and ferroptosis, were tumor prone but failed to develop early-onset tumors. By identifying a novel p53 acetylation site at lysine K136, we found that simultaneous mutations at all five acetylation sites (p53-5KR) diminished its remaining tumor suppression function. Moreover, the embryonic lethality caused by the deficiency of mdm2 was fully rescued in the background of p535KR/5KR , but not p534KR/4KR background. p53-4KR retained the ability to suppress mTOR function but this activity was abolished in p53-5KR cells. Notably, the early-onset tumor formation observed in p535KR/5KR and p53-null mice was suppressed upon the treatment of the mTOR inhibitor. These results suggest that p53-mediated mTOR regulation plays an important role in both embryonic development and tumor suppression, independent of cell cycle arrest, senescence, apoptosis, and ferroptosis.
p53 plays a central role by acting as a transcription factor to modulate various types of cellular processes to suppress cancer development (Kastenhuber and Lowe 2017; Kaiser and Attardi 2018). Although the classic activities of p53 including cell cycle arrest, senescence, and apoptosis serve as critical barriers to cancer development, accumulating evidence suggests that loss of p53-dependent cell cycle arrest, apoptosis, and senescence is not sufficient to abrogate the tumor suppression activity of p53 (Brady et al. 2011; Li et al. 2012; Valente et al. 2013). We and others recently found that p53 plays an important role in modulating ferroptotic responses through its metabolic targets (Jiang et al. 2015; Jennis et al. 2016; Ou et al. 2016; Saint-Germain et al. 2017). Ferroptosis, an iron-dependent form of nonapoptotic cell death driven by lipid-based reactive oxygen species (ROS), connects tumor suppression with several different metabolic pathways (Stockwell et al. 2017). Indeed, p53-3KR (3KR:K117R + K161R + K162R), an acetylation-defective mutant that fails to induce cell cycle arrest, senescence and apoptosis, retains the tumor suppression function and the ability to promote ferroptosis (Jiang et al. 2015). By identifying another acetylation site at lysine K98 in mouse p53 (or K101 for human p53), we found that simultaneous mutations at all four acetylation sites (4KR:K98R + K117R + K161R + K162R) abolished its ferroptosis activity and partially abrogated its tumor suppression function in xenograft tumor models (Wang et al. 2016). Moreover, we identified a novel ALOX12-mediated, GPX4-independent ferroptosis pathway that is critical for the tumor suppression activity of p53, independent of the classic activities in cell cycle arrest, apoptosis, and senescence (Chu et al. 2019; Stockwell et al. 2020). Nevertheless, it remains unclear whether additional regulatory pathways unrelated to ferroptosis, cell cycle arrest, senescence, and apoptosis contribute to p53-mediated tumor suppression.
Results and Discussion
p53-4KR mice are tumor‐‐prone but fail to develop early-onset tumors as observed in p53-null mice
To examine whether loss of ferroptosis, cell cycle arrest, apoptosis, and senescence leads to tumor development, a p53-4KR mutant mouse containing four lysine-to-arginine mutations (K98R, K117R, K161R, and K162R) was generated (Supplemental Figs. S1, S2A). The p53-4KR heterozygote mice were grossly normal and the intercross of p53-4KR heterozygote mice produced p53-4KR homozygote mice at a ratio close to the Mendelian distribution (Supplemental Fig. S2B,C). However, p53-4KR mice developed tumors as they aged, resulting in a median life span of 61 wk for the p53-4KR mice (Fig. 1A). Although p53-4KR mice were much more tumor-prone than p53-3KR mice, the early-onset tumors were not observed in p53-4KR mice (Fig. 1A). Most of the tumors developed in p53-4KR mice were lymphomas, including thymic lymphoma (thymoma) (Fig. 1B, panel 5 vs. 1) and B-cell lymphoma (splenomegaly) (Fig. 1B, panel 13 vs. 9). Histological analysis revealed gross disruption of the normal structures of thymus and spleen due to the proliferation of tumor cells (Fig. 1B, panels 2,3 vs. 6,7, and 10,11 vs. 14,15). Furthermore, the immunostaining of p53 was positive in the tumor cells, indicating that p53-4KR accumulated during tumorigenesis (Fig. 1B, panel 8 vs. 4 and 16 vs. 12). There were also metastases in the p53-4KR mice with tumor burden indicated by the presence of cells in many tissues with intense blue hematoxylin nuclear staining, typically associated with proliferating cells (Fig. 1C, panel 4 vs. 1 and 11 vs. 8). Many of the metastatic cells were positive for p53 staining (Fig. 1C, panel 5 vs. 2 and 12 vs. 9), and ki67 staining (Fig. 1C, panel 6 vs. 3 and 13 vs. 10). Finally, these cells were positive for CD3 staining, indicating that they were T-cells originated from the thymoma of this particular mouse (Fig. 1C, panels 7, 14). These data suggest that the loss of p53-mediated ferroptosis, in addition to cell cycle arrest, senescence, and apoptosis promotes tumor development in vivo. Although p53-4KR mice are tumor-prone, they do not develop early-onset tumors as observed in p53-null mice, suggesting that p53-4KR has yet uncovered tumor suppression activities.
Figure 1.
p53-4KR mice are tumor prone but with a long tumor latency. (A) Kaplan–Meier survival analysis of p53-4KR mice with wild-type, p53-3KR, and p53-null mice included as controls. Statistical values (P) are indicated. (B) Representative pictures of wild-type thymus (panels 1–4), thymoma from p53-4KR mouse (panels 5–8), wild-type spleen (panels 9–12), and splenomegaly from p53-4KR mouse (panels 13–16). (Panels 1,5,9,13) Gross appearances. (Panels 2,6,10,14) Hematoxylin and eosin (H&E) staining 40×. (Panels 3,7,11,15) H&E staining 200×. (Panels 4,8,12,16 ) Immunostaining of p53. (C) Metastases in liver and kidney of a p53-4KR mouse with thymoma. (Panels 1–3) Wild-type liver, (Panels 4–7) liver from the p53-4KR mouse. (Panels 8–10) Wild-type kidney. (Panels 11–14) Kidney from the p53-4KR mouse. (Panels 1,4,8,11) H&E staining. (Panels 2,5,9,12) Immunostaining of p53. (Panels 3,6,10,13) Immunostaining of ki67. (Panels 7,14) Immunostaining of CD3. (D) Pictures of representative embryos. (Panel 1) p53, E14.5. (Panel 2) p53, E14.5. (Panel 3) p53, E16.5. (Panel 4) p53, E14.5. (Panel 5) p53, E14.5. (Panel 6) p53, E16.5. An asterisk indicates edema.
p53-4KR mice are tumor prone but with a long tumor latency. (A) Kaplan–Meier survival analysis of p53-4KR mice with wild-type, p53-3KR, and p53-null mice included as controls. Statistical values (P) are indicated. (B) Representative pictures of wild-type thymus (panels 1–4), thymoma from p53-4KR mouse (panels 5–8), wild-type spleen (panels 9–12), and splenomegaly from p53-4KR mouse (panels 13–16). (Panels 1,5,9,13) Gross appearances. (Panels 2,6,10,14) Hematoxylin and eosin (H&E) staining 40×. (Panels 3,7,11,15) H&E staining 200×. (Panels 4,8,12,16 ) Immunostaining of p53. (C) Metastases in liver and kidney of a p53-4KR mouse with thymoma. (Panels 1–3) Wild-type liver, (Panels 4–7) liver from the p53-4KR mouse. (Panels 8–10) Wild-type kidney. (Panels 11–14) Kidney from the p53-4KR mouse. (Panels 1,4,8,11) H&E staining. (Panels 2,5,9,12) Immunostaining of p53. (Panels 3,6,10,13) Immunostaining of ki67. (Panels 7,14) Immunostaining of CD3. (D) Pictures of representative embryos. (Panel 1) p53, E14.5. (Panel 2) p53, E14.5. (Panel 3) p53, E16.5. (Panel 4) p53, E14.5. (Panel 5) p53, E14.5. (Panel 6) p53, E16.5. An asterisk indicates edema.
Embryonic lethality caused by mdm2 deficiency is only partially rescued by p53-4KR mutant
Our previous study indicated that p53-mediated ferroptosis, like its canonical activities, significantly contribute to embryonic development and the lethality associated with the loss of mdm2 (Jiang et al. 2015). To determine whether the embryonic lethality caused by mdm2 deficiency can be rescued in the background of p53, p53mice were intercrossed to determine whether live p53mice can be obtained. No live pups of p53 were ever recovered from the cross, suggesting that p53-4KR mutant cannot fully rescue the embryonic lethality of mdm2mice. To determine whether there was partial rescue of mdm2mice by the p53-4KR mutant, timed breeding was set up to obtain p53 embryos at various stages of gestation (Supplemental Fig. S3A). Notably, p53 embryos displayed a similar developmental characteristics compared with that of the p53 embryos at E14.5 (Fig. 1D, panel 5 vs. 2). In comparison, p53 embryos were already dead at E14.5 (Fig. 1D, panel 4 vs. 1). These results suggest that mdm2 knockout embryos were partially rescued by p53-4KR mutant up to E14.5. However, p53 embryos displayed edema at E16.5 (Fig. 1D, panel 6 vs. 3), consistent with cardiovascular defects in these embryos, and died by E18.5. To determine whether p53-4KR protein can still be regulated by Mdm2, immunostaining of p53 was performed using E14.5 embryonic brains (Supplemental Fig. S3B, panels 1,3). There was modest accumulation of p53-4KR protein in the neuronal cells from the p53 E14.5 embryo (Supplemental Fig. S3, panel B2). In contrast, the cells in the brain from the E14.5 p53 embryo contained p53 staining ubiquitously, demonstrating that p53-4KR protein was stabilized in the absence of Mdm2 (Supplemental Fig. S3, panel B4). These results suggest that p53-4KR mutant has remnant activities, which cause detrimental defects during embryonic development in the absence of Mdm2.
K139 acetylation is important for the remaining tumor suppression
To further elucidate the role of acetylation in modulating p53 function, we searched for additional acetylation sites that may be responsible for the remaining activity of p53. Notably, mass spectrometry analysis of human p53 protein revealed a new acetylation modification site at K139, which is evolutionarily conserved (Fig. 2A). The K139 lysine residue resides in the DNA-binding domain of p53 and is homologous to the K136 lysine residue in murine p53 (Fig. 2B). To detect acetylation specific at the K139 site, human p53 8KR (K139 wild type, 8KR: K101R + K120R + K164R + K370R + K372R + K373R + K381R + K382R + K386R) and 9KR (K139R+8KR) proteins were coexpressed with acetylase Tip60 or CBP, respectively (Fig. 2C). After immunoprecipitation and Western blot assay, no acetylation on p53 was detected in the absence of acetyltransferases (Fig. 2C, lanes 1,2). Coexpression of K139 wild-type p53, but not K139R p53, with Tip60 and CBP resulted in increased levels of K139 acetylation, suggesting that Tip60 and CBP are capable to acetylate p53 at K139 site (Fig. 2C, lanes 3,5 vs. 4,6). Next, we examined the K139 acetylation of endogenous p53 during DNA damage responses. To this end, we treated human osteosarcoma U2OS cells with doxorubicin. Indeed, the K139 acetylation levels of endogenous p53 were induced upon DNA damage (Fig. 2D, lane 2 vs. 1). Together, these results suggest acetylation on K139 site occurs upon p53 activation in vivo.
Figure 2.
Identification of a novel acetylation site in p53 DNA binding domain and its role in tumor suppression. (A) A new p53 acetylation site K139 was identified by mass spectrometry, which is conserved in human, mouse, and rat p53. (B) Human p53 K139, which is K136 in mouse p53, locates in DNA-binding domain among the previously identified acetylation sites. (C) Acetylation of p53 K139 by cotransfection with acetyltransferase Tip60 or CBP. After immunoprecipitation, K139 acetylation was detected by Western blot using the anti-p53 acetylated K139 antibody. The total protein levels for p53 was detected by DO-1 antibody. (D) Acetylation on K139 of endogenous p53 in U2OS cells treated with doxorubicin. After immunoprecipitation, K139 acetylation was detected by Western blot using the anti-p53 acetylated K139 antibody. (E) Representative tumors in p53-5KR mice. (Panel 1) Thymoma. (Panel 2) B-lymphoma. (F) Kaplan–Meier tumor-free survival curves of p53 mutant mice. Statistical values (P) are indicated.
Identification of a novel acetylation site in p53 DNA binding domain and its role in tumor suppression. (A) A new p53 acetylation site K139 was identified by mass spectrometry, which is conserved in human, mouse, and rat p53. (B) Human p53 K139, which is K136 in mouse p53, locates in DNA-binding domain among the previously identified acetylation sites. (C) Acetylation of p53 K139 by cotransfection with acetyltransferase Tip60 or CBP. After immunoprecipitation, K139 acetylation was detected by Western blot using the anti-p53 acetylated K139 antibody. The total protein levels for p53 was detected by DO-1 antibody. (D) Acetylation on K139 of endogenous p53 in U2OS cells treated with doxorubicin. After immunoprecipitation, K139 acetylation was detected by Western blot using the anti-p53 acetylated K139 antibody. (E) Representative tumors in p53-5KR mice. (Panel 1) Thymoma. (Panel 2) B-lymphoma. (F) Kaplan–Meier tumor-free survival curves of p53 mutant mice. Statistical values (P) are indicated.To examine the role of K139 acetylation in modulating p53 function in vivo, we generated p53-5KR mutant mouse containing five lysine-to-arginine mutations (K98R, K117R, K136R, K161R, and K162R) (Supplemental Figs. S4, Fig. S5A–C). p53-5KR mice were developmentally normal but tumor prone like p53-null mice. Upon necropsy, most of the p53-5KR mice had tumors commonly found in p53-null mice, such as thymoma (Fig. 2E, panel 1) and B-cell lymphomas (Fig. 2E, panel 2). Like p53-4KR, the p53-5KR mutant proteins accumulated during tumorigenesis (Supplemental Fig. S6, panels 2,4,6 vs. 1,3,5). Significantly, the median life-span of the p53-5KR mice decreased to 37 wk, compared with 61 wk for the p53-4KR mice, suggesting that p53-5KR mutant has further relinquished the remaining tumor suppression function observed in p53-4KR (Fig. 2F).
Differential effects on mTOR activity by p53 acetylation-deficient mutants
The SESTRIN (SESN1–3) family plays an important role in suppression of mechanistic target of rapamycin kinase complexes 1 and 2 (mTORC1 and mTORC2) (Budanov 2011). It is well established that p53 is able to suppress mTOR activity by activating SESTRIN gene expression (Ellisen et al. 2002; Brugarolas et al. 2004; Feng et al. 2005; Sofer et al. 2005; Budanov and Karin 2008; Olovnikov et al. 2009; Feng and Levine 2010; Budanov 2011; Ding et al. 2019). Interestingly, upon analysis of our RNA-seq data, we found that the mRNA levels of SENS1 and SENS2 were induced upon p53-4KR expression. To ascertain whether SESN1 and SESN2 are indeed regulated by p53 acetylation-defective mutants, the expression of SESN1 and SESN2 was tested using Tet-on-inducible H1299 stable lines expressing mouse p53-3KR, p53-4KR, and p53-5KR (Jiang et al. 2015; Wang et al. 2016). As shown in Figure 3A, induction of the expression of p53-3KR and p53-4KR led to similar increases of mRNA levels of SESN2, whereas the levels of SESN1 induced by p53-4KR were much weaker than the ones induced by p53-3KR. In contrast, the induction of SESN1 and SESN2 was largely abolished using p53-5KR mutant (Fig. 3A). In addition, the levels of DDIT4 (also known as REDD1), another known p53 target involved in repression of mTOR activity (Ellisen et al. 2002; Brugarolas et al. 2004; Sofer et al. 2005), were also induced under the same condition by p53-3KR and p53-4KR, but not by p53-5KR (Fig. 3A). Next, we tested these findings using p53-4KR and p53-5KR MEFs. After treating the MEFs with etoposide for 24 h to induce p53 activation, the total RNA was extracted, followed by real time-PCR (RT-PCR) assays to determine the relative expression levels of SESN2 and DDIT4. Consistent with the results from the p53-inducible cell lines, the expression of SESN2 and DDIT4 increased after etoposide treatment in p53-4KR MEFs (Fig. 3B). In contrast, the same treatment failed to induce SESN2 and DDIT4 expression in p53-5KR MEFs (Fig. 3B). These results demonstrate that p53-4KR, but not p53-5KR, retains the ability to activate SENS2 and DDIT4.
Figure 3.
p53-dependent regulation of SESN1, SESN2, and DDIT4, and the effects in suppression of mTOR signaling. (A) The relative mRNA levels of sesn1, sesn2, and DDIT4, determined by RT-PCR assays, in H1299 cells treated with doxycycline for 0, 8, 16, 24, and 48 h to express p53 mutants. (B) The relative mRNA levels of sesn2 and DDIT4 in p53 and p53 MEFs treated with etoposide for 0, 8, and 24 h. (C) Effects on mTOR signaling after activation of p53 by treating p53-4KR and p53-5KR MEFs with etoposide. The whole-cell extracts were analyzed by Western blotting with antibodies as indicated. The levels of actin were used for the protein loading control. (se) Short exposure, (le) long exposure.
p53-dependent regulation of SESN1, SESN2, and DDIT4, and the effects in suppression of mTOR signaling. (A) The relative mRNA levels of sesn1, sesn2, and DDIT4, determined by RT-PCR assays, in H1299 cells treated with doxycycline for 0, 8, 16, 24, and 48 h to express p53 mutants. (B) The relative mRNA levels of sesn2 and DDIT4 in p53 and p53 MEFs treated with etoposide for 0, 8, and 24 h. (C) Effects on mTOR signaling after activation of p53 by treating p53-4KR and p53-5KR MEFs with etoposide. The whole-cell extracts were analyzed by Western blotting with antibodies as indicated. The levels of actin were used for the protein loading control. (se) Short exposure, (le) long exposure.Since both SENS2 and DDIT4 have been implicated in repressing mTOR activity, we examine whether p53-4KR and p53-5KR have differential effects in modulating mTOR function. To this end, we monitored the mTOR activity in p53-4KR and p53-5KR MEFs under normal and DNA-damaging conditions. Both p53 and DDIT4 levels were increased in p53-4KR cells upon DNA damage (Fig. 3C, lane 2 vs. 1). Indeed, the levels of phosphorylated p70S6K and 4EBP1, two well-known markers for mTOR activation (Levine et al. 2006; Feng and Levine 2010; Inoki et al. 2012; Saxton and Sabatini 2017; Kim and Guan 2019), were reduced, whereas the total protein levels of both p70S6K and 4EBP1 remained unchanged (Fig. 3C, lane 2 vs. 1). These results implicate that mTOR activity is suppressed upon activation of p53-4KR mutant. In contrast, after the same treatment, p53-5KR failed to induce DDIT4 expression and the levels of phosphorylated p70S6K and 4EBP1 remained unchanged (Fig. 3C, lane 4 vs. 3). These results demonstrate that mTOR signaling is suppressed by p53-4KR, but not by p53-5KR.
p53-5KR is able to fully rescue the embryonic lethality caused by mdm2 deficiency.
Notably, intercross of p53mice generated p53mice, all of which survived well past weaning age (Fig. 4A; Supplemental Fig. S7). Immunostaining of p53 revealed that p53-5KR protein was accumulated in many tissues in p53mice, such as in spleen, thymus, and testis (Supplemental Fig. S8, panels 1–3), but not in lung and liver (Supplemental Fig. S8, panels 5,6). Taken together, these data indicate that simultaneous mutations at all five acetylation sites (p53-5KR: K136R + 4KR) abrogates the remaining tumor suppression function of p53-4KR and fully rescues the embryonic lethality caused by mdm2 deficiency.
Figure 4.
Tumor suppression through inhibiting mTOR signaling. (A) A representative picture of p53/mdm2 and p53 mice. (B) Representative pictures of thymoma from p53 mice on control (panel 1) and rapamycin-containing (panel 2) diet. (C) Kaplan–Meier survival curves of p53 mice on the control and rapamycin containing diet. (D) Kaplan–Meier survival curves of p53-null mice on the control and rapamycin containing diet. Statistical values (P) are indicated. (E) Western blot of the whole-cell extracts from wild-type thymus (lane 1) and from tumor samples of p53-4KR mice (lanes 2,3), p53-5KR mice on control diet (lanes 4,5), p53-5KR mice on the rapamycin diet (lanes 6,7), p53-null mice on the control diet (lanes 8,9), and p53-null mice on the rapamycin diet (lanes 10,11) using antibodies of anti-phospho-4E-BP1 and anti-total 4E-BP1. The levels of actin were used as the protein loading control.
Tumor suppression through inhibiting mTOR signaling. (A) A representative picture of p53/mdm2 and p53mice. (B) Representative pictures of thymoma from p53mice on control (panel 1) and rapamycin-containing (panel 2) diet. (C) Kaplan–Meier survival curves of p53mice on the control and rapamycin containing diet. (D) Kaplan–Meier survival curves of p53-null mice on the control and rapamycin containing diet. Statistical values (P) are indicated. (E) Western blot of the whole-cell extracts from wild-type thymus (lane 1) and from tumor samples of p53-4KR mice (lanes 2,3), p53-5KR mice on control diet (lanes 4,5), p53-5KR mice on the rapamycin diet (lanes 6,7), p53-null mice on the control diet (lanes 8,9), and p53-null mice on the rapamycin diet (lanes 10,11) using antibodies of anti-phospho-4E-BP1 and anti-total 4E-BP1. The levels of actin were used as the protein loading control.
The early-onset tumor formation observed in p53 and p53-null mice is suppressed upon treatment of rapamycin
In contrast to p53-5KR mice and p53-null mice, p53-4KR mice do not develop early-onset tumors as observed in p53-null mice. We further showed that unlike p53-5KR, p53-4KR retains the ability to suppress mTOR activity. It is very likely that mTOR signaling is crucial for early-onset tumor formation observed in both p53-5KR and p53-null mice. To test this hypothesis, we monitored the tumor development of a cohort of p53-5KR mice fed with either control diet or rapamycin diet (42 mg of rapamycin/kg diet) immediately after they were weaned. Interestingly, those on rapamycin diet had lower tumor burden (Fig. 4B, panel 2 vs. 1) and longer survival than the mice on the control diet (Fig. 4C). The median survival for p53-5KR mice on rapamycin was significantly longer than the one for p53-5KR mice on the control diet, 49.5 wk versus 36.8 wk (Fig. 4C). To further demonstrate the significance of inhibiting mTOR activity in p53-mediated tumor suppression, we also treated p53-null mice with a rapamycin diet. Similarly, p53-null mice on the rapamycin diet also had longer survival (36.3 wk) than those on the control diet (23.4 wk; P = 0.003) (Fig. 4D). To explore whether the suppression of mTOR signaling contributed to the decrease of tumorigenecity in rapamycin-treated mice, markers of mTOR signaling were tested in tumor samples by Western blotting. The results showed that the levels of phosphorylated 4E-BP1 was lower in the thymus from wild-type mice and in the tumors from p53-4KR mice, compared with those in the tumors from p53-5KR and p53-null mice on the control diet (Fig. 4E, lanes 1–3 vs. 4,5,8,9). Notably, levels of phospho-4E-BP1 were reduced in tumors from rapamycin-treated p53-5KR and p53-null mice (Fig. 4E, lanes 6,7 vs. 4,5 and lanes 10,11 vs. 8,9). These results indicate that mTOR inhibition plays a critical role in modulating the early-onset of tumor formation.The mTOR protein kinase acts as a central node in coordinating nutrient and growth factor signaling with cell growth. Although numerous studies indicate that p53 is capable of inhibiting mTOR activity through multiple metabolic targets, the precise role of mTOR inhibition in p53-mediated tumor suppression is not well defined. We found that the acetylation-defective mutant p53-4KR, which lacks the ability to undergo p53-mediated cell cycle arrest, senescence, apoptosis, and ferroptosis, retains the ability to inhibit mTOR activity through activating cellular targets such as SENS2 and DITT4, while this activity is completely abolished in p53-5KR. Moreover, the embryonic lethality caused by mdm2 deficiency is only partially rescued in the p53 background, but fully rescued in the background of p53. Our results demonstrate that p53-mediated mTOR inhibition is critically involved in both embryonic development and tumor suppression, independent of cell cycle arrest, senescence, apoptosis, and ferroptosis. Notably, although p53-4KR retains its ability in mTOR inhibition, most of p53-4KR mice developed tumors with time. Nevertheless, tumorigenesis in p53-4KR mice is significantly delayed, compared with p53-5KR mice that lacks the ability to inhibit mTOR. It is very likely that p53-mediated mTOR inhibition plays an important role in modulating early-onset tumor formation but is not sufficient to completely suppress tumor formation. This notion is further validated in p53-null mice upon treatment of rapamycin, a well-known mTOR inhibitor. It is worth noting that despite immense efforts in developing highly potent mTOR inhibitors, most of them lack therapeutic efficacy in vivo (Zaytseva et al. 2012; Fruman and Rommel 2014; Huang et al. 2015). Therefore, our findings suggest that mTOR inhibitors may potentially be used as a novel strategy for delaying tumor development or cancer prevention. Numerous studies have established a central role for mTOR in regulating many fundamental cell processes, from protein synthesis to autophagy. Future studies are clearly needed to investigate whether other unknown activities are still retained by both p53-4KR and p53-5KR mutants and whether p53-mediated mTOR inhibition acts through autophagy, given that autophagy is critically involved in modulating tumor development (Kenzelmann Broz et al. 2013; Simon et al. 2017). Together, our study suggests that p53-mediated mTOR regulation acts as a previously unanticipated checkpoint in both embryonic development and tumor suppression, independent of cell cycle arrest, senescence, apoptosis, and ferroptosis.
Materials and methods
p53 mutant mice
p53-4KR knockin mouse was generated by gene targeting in mouse embryonic stem cells (Supplemental Fig. S1).The targeting event was confirmed by Southern blot (Supplemental Fig. S2A). After germline transmission and the removal of the neomycin cassette, p53-4KR mice were genotyped by PCR assays (Supplemental Fig. S2B,C). Similarly, p53-5KR knockin mice were generated containing K136R and the 4KR mutation (Supplemental Figs. S4, S5A–C). p53-null mice were from the Jackson Laboratory (2101). Maintaining and experimental protocols of mice were approved by the Institutional Animal Care and Use Committee (IACUC) of Columbia University.
Histology and immunostaining
The tumor samples were processed according to the standard procedures. The antibodies used in immunostaining are anti-p53 (Novocastra CM5), anti-ki67 (Abcam ab15580), and anti-CD3 (Thermo Scientific RM9107). Sagittal sections of the embryos were immunostained using anti-p53 (CM5) antibody and counterstained with hematoxylin.
Tumor-free survival curves
Kaplan-Meier survival curves was composed using GraphPad Prism version 5.00 (GraphPad Software) for Windows.
Protein purification and mass spectrometry
The FLAG-tagged p53 was purified from H1299 cells according to the previous procedure (Li et al. 2012), followed by tryptic digestion and mass spectrometry.
Western blot analysis
Western blot analysis was done using the whole-cell extracts prepared in RIPA buffer. The blot was probed with antibodies of a polyclonal antibody raised against human p53 K139 acetylated peptide, anti-human p53 (DO-1, Santa Cruz), anti-Phospho-p70 S6 kinase (Thr389; Cell Signaling Technologies), anti-p70 S6 kinase (Cell Signaling Technologies 49D7), anti-phospho-4E-BP1 (Ser65; Cell Signaling Technologies 9451), anti-4E-BP1 (Cell Signaling Technologies 9644), anti-DDIT4 (Proteintech 10638-1-AP), and anti-mouse p53 (Novocastra CM5). The levels of β-actin (Sigma-Aldrich A3853) were used as the protein loading control.
RNA isolation and real-time (RT)-PCR
Total RNA was isolated using TRIzol (Invitrogen) and treated with DNase I (Ambion). RT-PCR assay was done according to the manufacturer's protocols. Primers used in the RT-PCR assays were as follows: Sesn1 (forward 5′-TGTCCCAACGTTTCGTGTC-3′ and reverse 5′-TGGATAGAGACGATTCACCAGA-3′), Sesn2 (forward 5′-CAGCGCTTTCATTCCAGTG-3′ and reverse 5′-CCGGGTGTAGACCCATCA-3′) Ddit4 (forward 5′-CCAGAGAAGAGGGCCTTGA-3′ and reverse 5′-CCATCCAGGTATGAGGAGTCTT-3′).
Manufacturing of rapamycin-containing diet
Rapamycin was purchased from Rapamycin Holdings. Encapsuled rapamycin (eRapamycin) diet was prepared with eudragit at 42 ppm active rapamycin per kilogram of diet, and the control diet was prepared with the equivalent amount of eudragit by Purina test diet through W.F. Fisher & Son (Neff et al. 2013; Miller et al. 2014).
Statistical methods
Results are shown as means ± S.D. Statistical significance was determined using a two-tailed, unpaired Student;s t-test or log rank (Mantel-Cox) Test for survival curves.
Authors: Daniela Kenzelmann Broz; Stephano Spano Mello; Kathryn T Bieging; Dadi Jiang; Rachel L Dusek; Colleen A Brady; Arend Sidow; Laura D Attardi Journal: Genes Dev Date: 2013-05-01 Impact factor: 11.361
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