Literature DB >> 33301896

Whole genome sequencing and genome annotation of Dermacoccus abyssi strain HZAU 226 isolated from spoiled eggs.

Xinshuai Zhang1, Yao Ruan1, Wukang Liu1, Qian Chen1, Lihong Gu1, Ailing Guo2.   

Abstract

Dermacoccus abyssi strain HZAU 226 is a spoilage bacterium isolated from eggs. So far, there are still few genomic resources available on the Dermacoccus abyssi. Here, we reported the complete genome sequence of Dermacoccus abyssi strain HZAU 226. High-quality DNA was extracted using the Qiagen kit, then single-molecule sequencing was performed by GridION sequencer. The raw data was quality-controlled and assembled to obtain the final genome, which consisted of a complete genome of 2,992,060 bp circular chromosome and a 64,524 bp plasmid. The structural and functional annotations of the genome were achieved through the analysis of different available databases, including antibiotic resistance genes, secondary metabolite synthesis genes and stress-related genes. Meanwhile, comparative genomic analyses of the strains were also performed. This is the first report on the complete genome of Dermacoccus abyssi, which will provide genomic resources for the study of spoilage bacteria in eggs.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Dermacoccus abyssi HZAU 226; Functional annotation; Stress-related genes; Whole genome sequencing

Mesh:

Year:  2020        PMID: 33301896     DOI: 10.1016/j.ygeno.2020.12.005

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  2 in total

1.  Genomic Insights into Omega-3 Polyunsaturated Fatty Acid Producing Shewanella sp. N2AIL from Fish Gut.

Authors:  Anchal Chaudhary; Omkar Avinash Ketkar; Sayed Irfan; Varnika Rana; Praveen Rahi; Rupesh Deshmukh; Jagdeep Kaur; Hena Dhar
Journal:  Biology (Basel)       Date:  2022-04-21

2.  Investigation of Streptomyces sp. Strain EMB24 Secondary Metabolite Profile Has Unraveled Its Extraordinary Antibacterial Potency Against Drug-Resistant Bacteria.

Authors:  Nikky Goel; Rajendra Singh; Seema Sood; Sunil Kumar Khare
Journal:  Mar Biotechnol (NY)       Date:  2022-10-11       Impact factor: 3.727

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.