Literature DB >> 33301543

The SARS-CoV-2 ORF10 is not essential in vitro or in vivo in humans.

Katarzyna Pancer1, Aleksandra Milewska2,3, Katarzyna Owczarek2, Agnieszka Dabrowska2,3, Michał Kowalski2, Paweł P Łabaj2, Wojciech Branicki2, Marek Sanak4, Krzysztof Pyrc2.   

Abstract

SARS-CoV-2 genome annotation revealed the presence of 10 open reading frames (ORFs), of which the last one (ORF10) is positioned downstream of the N gene. It is a hypothetical gene, which was speculated to encode a 38 aa protein. This hypothetical protein does not share sequence similarity with any other known protein and cannot be associated with a function. While the role of this ORF10 was proposed, there is growing evidence showing that the ORF10 is not a coding region. Here, we identified SARS-CoV-2 variants in which the ORF10 gene was prematurely terminated. The disease was not attenuated, and the transmissibility between humans was maintained. Also, in vitro, the strains replicated similarly to the related viruses with the intact ORF10. Altogether, based on clinical observation and laboratory analyses, it appears that the ORF10 protein is not essential in humans. This observation further proves that the ORF10 should not be treated as the protein-coding gene, and the genome annotations should be amended.

Entities:  

Year:  2020        PMID: 33301543     DOI: 10.1371/journal.ppat.1008959

Source DB:  PubMed          Journal:  PLoS Pathog        ISSN: 1553-7366            Impact factor:   6.823


  32 in total

1.  Evolution of SARS-CoV-2 in Spain during the First Two Years of the Pandemic: Circulating Variants, Amino Acid Conservation, and Genetic Variability in Structural, Non-Structural, and Accessory Proteins.

Authors:  Paloma Troyano-Hernáez; Roberto Reinosa; África Holguín
Journal:  Int J Mol Sci       Date:  2022-06-07       Impact factor: 6.208

2.  Studying bona fide SARS-CoV-2 biology in a BSL-2 biosafety environment using a split-virus-genome system.

Authors:  Yingxin Ma; Guobin Mao; Weishan Yang; Guoqiang Wu; Guoqiang Li; Xiaoying Li; Xin Lin; Junnan Lu; Shijun Zhao; Wei Zhao; Junbiao Dai; Xian-En Zhang
Journal:  Sci China Life Sci       Date:  2022-05-12       Impact factor: 10.372

Review 3.  Identifying Markers of Emerging SARS-CoV-2 Variants in Patients With Secondary Immunodeficiency.

Authors:  Nathan M Markarian; Gaël Galli; Dhanesh Patel; Mark Hemmings; Priya Nagpal; Albert M Berghuis; Levon Abrahamyan; Silvia M Vidal
Journal:  Front Microbiol       Date:  2022-07-01       Impact factor: 6.064

Review 4.  Network for network concept offers new insights into host- SARS-CoV-2 protein interactions and potential novel targets for developing antiviral drugs.

Authors:  Neda Eskandarzade; Abozar Ghorbani; Samira Samarfard; Jose Diaz; Pietro H Guzzi; Niloofar Fariborzi; Ahmad Tahmasebi; Keramatollah Izadpanah
Journal:  Comput Biol Med       Date:  2022-04-30       Impact factor: 6.698

Review 5.  Science's Response to CoVID-19.

Authors:  Marcus J C Long; Yimon Aye
Journal:  ChemMedChem       Date:  2021-06-22       Impact factor: 3.540

6.  ORF10-Cullin-2-ZYG11B complex is not required for SARS-CoV-2 infection.

Authors:  Elijah L Mena; Callie J Donahue; Laura Pontano Vaites; Jie Li; Gergely Rona; Colin O'Leary; Luca Lignitto; Bearach Miwatani-Minter; Joao A Paulo; Avantika Dhabaria; Beatrix Ueberheide; Steven P Gygi; Michele Pagano; J Wade Harper; Robert A Davey; Stephen J Elledge
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-27       Impact factor: 11.205

7.  Identification of novel bat coronaviruses sheds light on the evolutionary origins of SARS-CoV-2 and related viruses.

Authors:  Hong Zhou; Jingkai Ji; Xing Chen; Yuhai Bi; Juan Li; Qihui Wang; Tao Hu; Hao Song; Runchu Zhao; Yanhua Chen; Mingxue Cui; Yanyan Zhang; Alice C Hughes; Edward C Holmes; Weifeng Shi
Journal:  Cell       Date:  2021-06-09       Impact factor: 66.850

Review 8.  SARS-CoV-2 Accessory Proteins in Viral Pathogenesis: Knowns and Unknowns.

Authors:  Natalia Redondo; Sara Zaldívar-López; Juan J Garrido; Maria Montoya
Journal:  Front Immunol       Date:  2021-07-07       Impact factor: 7.561

9.  Identification of evolutionarily stable functional and immunogenic sites across the SARS-CoV-2 proteome and greater coronavirus family.

Authors:  Chen Wang; Daniel M Konecki; David C Marciano; Harikumar Govindarajan; Amanda M Williams; Brigitta Wastuwidyaningtyas; Thomas Bourquard; Panagiotis Katsonis; Olivier Lichtarge
Journal:  Bioinformatics       Date:  2021-05-27       Impact factor: 6.931

Review 10.  Structure and Function of Major SARS-CoV-2 and SARS-CoV Proteins.

Authors:  Ritesh Gorkhali; Prashanna Koirala; Sadikshya Rijal; Ashmita Mainali; Adesh Baral; Hitesh Kumar Bhattarai
Journal:  Bioinform Biol Insights       Date:  2021-06-22
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