Literature DB >> 33301095

Development of Microsatellite Markers Using Next-Generation Sequencing.

Hélène Vignes1,2, Ronan Rivallan3,4.   

Abstract

Among the molecular markers used for plant genetic studies, microsatellite markers are easy to implement and can provide suitable codominant markers for molecular taxonomy.Here we describe a method to obtain microsatellite primers from genomic DNA using a next-generation sequencer.

Keywords:  Bioinformatic analysis; Microsatellite; Next-generation sequencing

Mesh：

Year:  2021        PMID： 33301095     DOI： 10.1007/978-1-0716-0997-2_11

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  4 in total

1.  Toward a unified approach to genetic mapping of eukaryotes based on sequence tagged microsatellite sites.

Authors:  J S Beckmann; M Soller
Journal:  Biotechnology (N Y)       Date:  1990-10

2.  ABySS: a parallel assembler for short read sequence data.

Authors:  Jared T Simpson; Kim Wong; Shaun D Jackman; Jacqueline E Schein; Steven J M Jones; Inanç Birol
Journal:  Genome Res       Date:  2009-02-27       Impact factor: 9.043

3.  MISA-web: a web server for microsatellite prediction.

Authors:  Sebastian Beier; Thomas Thiel; Thomas Münch; Uwe Scholz; Martin Mascher
Journal:  Bioinformatics       Date:  2017-08-15       Impact factor: 6.937

4.  The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Authors:  Enis Afgan; Dannon Baker; Bérénice Batut; Marius van den Beek; Dave Bouvier; Martin Cech; John Chilton; Dave Clements; Nate Coraor; Björn A Grüning; Aysam Guerler; Jennifer Hillman-Jackson; Saskia Hiltemann; Vahid Jalili; Helena Rasche; Nicola Soranzo; Jeremy Goecks; James Taylor; Anton Nekrutenko; Daniel Blankenberg
Journal:  Nucleic Acids Res       Date:  2018-07-02       Impact factor: 16.971
  4 in total

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