Literature DB >> 33301086

Guidelines for the Choice of Sequences for Molecular Plant Taxonomy.

Pascale Besse1.   

Abstract

This chapter presents an overview of the major plant DNA sequences and molecular methods available for plant taxonomy. Guidelines are provided for the choice of sequences and methods to be used, based on the DNA compartment (nuclear, chloroplastic, mitochondrial), evolutionary mechanisms, and the level of taxonomic differentiation of the plants under survey.

Keywords:  Chloroplast DNA; Evolution; Low copy DNA; Mitochondrial DNA; Molecular plant taxonomy; Nuclear DNA; Repeated DNA

Mesh:

Substances:

Year:  2021        PMID: 33301086     DOI: 10.1007/978-1-0716-0997-2_2

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  40 in total

Review 1.  LINEs, SINEs and repetitive DNA: non-LTR retrotransposons in plant genomes.

Authors:  T Schmidt
Journal:  Plant Mol Biol       Date:  1999-08       Impact factor: 4.076

Review 2.  Coincidence, coevolution, or causation? DNA content, cell size, and the C-value enigma.

Authors:  T R Gregory
Journal:  Biol Rev Camb Philos Soc       Date:  2001-02

Review 3.  Microsatellites: simple sequences with complex evolution.

Authors:  Hans Ellegren
Journal:  Nat Rev Genet       Date:  2004-06       Impact factor: 53.242

Review 4.  Ribosomal ITS sequences and plant phylogenetic inference.

Authors:  I Alvarez; J F Wendel
Journal:  Mol Phylogenet Evol       Date:  2003-12       Impact factor: 4.286

Review 5.  The genetic organization of chromosomes.

Authors:  C A Thomas
Journal:  Annu Rev Genet       Date:  1971       Impact factor: 16.830

Review 6.  SINEs of progress: Mobile element applications to molecular ecology.

Authors:  David A Ray
Journal:  Mol Ecol       Date:  2007-01       Impact factor: 6.185

Review 7.  Ribosomal DNA: molecular evolution and phylogenetic inference.

Authors:  D M Hillis; M T Dixon
Journal:  Q Rev Biol       Date:  1991-12       Impact factor: 4.875

8.  Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects.

Authors:  Péter Poczai; Jaakko Hyvönen
Journal:  Mol Biol Rep       Date:  2009-07-21       Impact factor: 2.316

9.  Genome size and the proportion of repeated nucleotide sequence DNA in plants.

Authors:  R B Flavell; M D Bennett; J B Smith; D B Smith
Journal:  Biochem Genet       Date:  1974-10       Impact factor: 1.890

10.  Short interspersed elements (SINEs) in plants: origin, classification, and use as phylogenetic markers.

Authors:  Jean-Marc Deragon; Xiaoyu Zhang
Journal:  Syst Biol       Date:  2006-12       Impact factor: 15.683

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