Literature DB >> 33297549

Improving the Management of Patients with Hearing Loss by the Implementation of an NGS Panel in Clinical Practice.

Gema García-García1,2, Alba Berzal-Serrano1, Piedad García-Díaz3, Rebeca Villanova-Aparisi1, Sara Juárez-Rodríguez1, Carlos de Paula-Vernetta3,4, Laura Cavallé-Garrido1,3,4, Teresa Jaijo1,2,5, Miguel Armengot-Carceller1,3,4,6, José M Millán1,2, Elena Aller1,2,5.   

Abstract

A cohort of 128 patients from 118 families diagnosed with non-syndromic or syndromic hearing loss (HL) underwent an exhaustive clinical evaluation. Molecular analysis was performed using targeted next-generation sequencing (NGS) with a custom panel that included 59 genes associated with non-syndromic HL or syndromic HL. Variants were prioritized according to the minimum allele frequency and classified according to the American College of Medical Genetics and Genomics guidelines. Variant(s) responsible for the disease were detected in a 40% of families including autosomal recessive (AR), autosomal dominant (AD) and X-linked patterns of inheritance. We identified pathogenic or likely pathogenic variants in 26 different genes, 15 with AR inheritance pattern, 9 with AD and 2 that are X-linked. Fourteen of the found variants are novel. This study highlights the clinical utility of targeted NGS for sensorineural hearing loss. The optimal panel for HL must be designed according to the spectrum of the most represented genes in a given population and the laboratory capabilities considering the pressure on healthcare.

Entities:  

Keywords:  clinical evaluation; genetics; hearing loss; molecular analysis; next-generation sequencing

Year:  2020        PMID: 33297549      PMCID: PMC7762334          DOI: 10.3390/genes11121467

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  76 in total

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Journal:  Hum Mutat       Date:  2012-01-06       Impact factor: 4.878

2.  Characterization of Usher syndrome type I gene mutations in an Usher syndrome patient population.

Authors:  Xiao Mei Ouyang; Denise Yan; Li Lin Du; J Fielding Hejtmancik; Samuel G Jacobson; Walter E Nance; An Ren Li; Simon Angeli; Muriel Kaiser; Valerie Newton; Steve D M Brown; Thomas Balkany; Xue Zhong Liu
Journal:  Hum Genet       Date:  2005-01-20       Impact factor: 4.132

3.  Mutation profile of all 49 exons of the human myosin VIIA gene, and haplotype analysis, in Usher 1B families from diverse origins.

Authors:  A Adato; D Weil; H Kalinski; Y Pel-Or; H Ayadi; C Petit; M Korostishevsky; B Bonne-Tamir
Journal:  Am J Hum Genet       Date:  1997-10       Impact factor: 11.025

4.  Otoancorin, an inner ear protein restricted to the interface between the apical surface of sensory epithelia and their overlying acellular gels, is defective in autosomal recessive deafness DFNB22.

Authors:  Ingrid Zwaenepoel; Mirna Mustapha; Michel Leibovici; Elisabeth Verpy; Richard Goodyear; Xue Zhong Liu; Sylvie Nouaille; Walter E Nance; Moien Kanaan; Karen B Avraham; Fredj Tekaia; Jacques Loiselet; Marc Lathrop; Guy Richardson; Christine Petit
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

5.  Sensorineural deafness and male infertility: a contiguous gene deletion syndrome.

Authors:  Yuzhou Zhang; Mahdi Malekpour; Navid Al-Madani; Kimia Kahrizi; Marvam Zanganeh; Naomi J Lohr; Marzieh Mohseni; Faezeh Mojahedi; Ahmad Daneshi; Hossein Najmabadi; Richard J H Smith
Journal:  J Med Genet       Date:  2006-11-10       Impact factor: 6.318

6.  A mutational analysis of the SLC26A4 gene in Spanish hearing-impaired families provides new insights into the genetic causes of Pendred syndrome and DFNB4 hearing loss.

Authors:  Alejandra Pera; Manuela Villamar; Antonio Viñuela; Marta Gandía; Carme Medà; Felipe Moreno; Concepción Hernández-Chico
Journal:  Eur J Hum Genet       Date:  2008-02-20       Impact factor: 4.246

7.  A novel nonsense mutation in MYO6 is associated with progressive nonsyndromic hearing loss in a Danish DFNA22 family.

Authors:  Kirsten M Sanggaard; Klaus W Kjaer; Hans Eiberg; Gudrun Nürnberg; Peter Nürnberg; Katrin Hoffman; Hanne Jensen; Charlotte Sørum; Nanna D Rendtorff; Lisbeth Tranebjaerg
Journal:  Am J Med Genet A       Date:  2008-04-15       Impact factor: 2.802

8.  Five novel loci for inherited hearing loss mapped by SNP-based homozygosity profiles in Palestinian families.

Authors:  Hashem Shahin; Tom Walsh; Amal Abu Rayyan; Ming K Lee; Jake Higgins; Diane Dickel; Kristen Lewis; James Thompson; Carl Baker; Alex S Nord; Sunday Stray; David Gurwitz; Karen B Avraham; Mary-Claire King; Moien Kanaan
Journal:  Eur J Hum Genet       Date:  2009-11-04       Impact factor: 4.246

9.  Q829X, a novel mutation in the gene encoding otoferlin (OTOF), is frequently found in Spanish patients with prelingual non-syndromic hearing loss.

Authors:  V Migliosi; S Modamio-Høybjør; M A Moreno-Pelayo; M Rodríguez-Ballesteros; M Villamar; D Tellería; I Menéndez; F Moreno; I Del Castillo
Journal:  J Med Genet       Date:  2002-07       Impact factor: 6.318

10.  Espin gene (ESPN) mutations associated with autosomal dominant hearing loss cause defects in microvillar elongation or organisation.

Authors:  F Donaudy; L Zheng; R Ficarella; E Ballana; M Carella; S Melchionda; X Estivill; J R Bartles; P Gasparini
Journal:  J Med Genet       Date:  2005-06-01       Impact factor: 6.318

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  5 in total

1.  Genetics of Hearing Impairment.

Authors:  Hannie Kremer; Ignacio Del Castillo
Journal:  Genes (Basel)       Date:  2022-05-11       Impact factor: 4.141

2.  Searching for the Molecular Basis of Partial Deafness.

Authors:  Dominika Oziębło; Natalia Bałdyga; Marcin L Leja; Henryk Skarżyński; Monika Ołdak
Journal:  Int J Mol Sci       Date:  2022-05-27       Impact factor: 6.208

Review 3.  The genetic etiology of hearing loss in Japan revealed by the social health insurance-based genetic testing of 10K patients.

Authors:  Shin-Ichi Usami; Shin-Ya Nishio
Journal:  Hum Genet       Date:  2021-10-01       Impact factor: 5.881

4.  Outcomes of Gene Panel Testing for Sensorineural Hearing Loss in a Diverse Patient Cohort.

Authors:  Elizabeth N Liao; Emily Taketa; Noura I Mohamad; Dylan K Chan
Journal:  JAMA Netw Open       Date:  2022-09-01

5.  Hearing Screening Combined with Target Gene Panel Testing Increased Etiological Diagnostic Yield in Deaf Children.

Authors:  Le Xie; Yue Qiu; Yuan Jin; Kai Xu; Xue Bai; Xiao-Zhou Liu; Xiao-Hui Wang; Sen Chen; Yu Sun
Journal:  Neural Plast       Date:  2021-07-23       Impact factor: 3.599

  5 in total

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