Literature DB >> 33297515

Machine Learning-Based Pipeline for High Accuracy Bioparticle Sizing.

Shaobo Luo1,2, Yi Zhang3, Kim Truc Nguyen4,2, Shilun Feng4,5, Yuzhi Shi4, Yang Liu4, Paul Hutchinson6, Giovanni Chierchia1, Hugues Talbot7, Tarik Bourouina1, Xudong Jiang4, Ai Qun Liu4,2.   

Abstract

High accuracy measurement of size is essential in physical and biomedical sciences. Various sizing techniques have been widely used in sorting colloidal materials, analyzing bioparticles and monitoring the qualities of food and atmosphere. Most imaging-free methods such as light scattering measure the averaged size of particles and have difficulties in determining non-spherical particles. Imaging acquisition using camera is capable of observing individual nanoparticles in real time, but the accuracy is compromised by the image defocusing and instrumental calibration. In this work, a machine learning-based pipeline is developed to facilitate a high accuracy imaging-based particle sizing. The pipeline consists of an image segmentation module for cell identification and a machine learning model for accurate pixel-to-size conversion. The results manifest a significantly improved accuracy, showing great potential for a wide range of applications in environmental sensing, biomedical diagnostical, and material characterization.

Entities:  

Keywords:  CCD; CMOS; machine learning; particle sizing; segmentation

Year:  2020        PMID: 33297515      PMCID: PMC7762436          DOI: 10.3390/mi11121084

Source DB:  PubMed          Journal:  Micromachines (Basel)        ISSN: 2072-666X            Impact factor:   2.891


  19 in total

Review 1.  Flow cytometry: basic principles and applications.

Authors:  Aysun Adan; Günel Alizada; Yağmur Kiraz; Yusuf Baran; Ayten Nalbant
Journal:  Crit Rev Biotechnol       Date:  2016-01-14       Impact factor: 8.429

Review 2.  Quantification and its applications in fluorescent microscopy imaging.

Authors:  Nicholas Hamilton
Journal:  Traffic       Date:  2009-05-05       Impact factor: 6.215

3.  Shape-based separation of synthetic microparticles.

Authors:  Peter L Mage; Andrew T Csordas; Tyler Brown; Daniel Klinger; Michael Eisenstein; Samir Mitragotri; Craig Hawker; H Tom Soh
Journal:  Nat Mater       Date:  2018-12-10       Impact factor: 43.841

4.  Principles of Amnis Imaging Flow Cytometry.

Authors:  David A Basiji
Journal:  Methods Mol Biol       Date:  2016

5.  Critical evaluation of Nanoparticle Tracking Analysis (NTA) by NanoSight for the measurement of nanoparticles and protein aggregates.

Authors:  Vasco Filipe; Andrea Hawe; Wim Jiskoot
Journal:  Pharm Res       Date:  2010-03-04       Impact factor: 4.200

6.  Mask R-CNN.

Authors:  Kaiming He; Georgia Gkioxari; Piotr Dollar; Ross Girshick
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2018-06-05       Impact factor: 6.226

Review 7.  Deep learning for cellular image analysis.

Authors:  Erick Moen; Dylan Bannon; Takamasa Kudo; William Graf; Markus Covert; David Van Valen
Journal:  Nat Methods       Date:  2019-05-27       Impact factor: 28.547

8.  Inflated Sporopollenin Exine Capsules Obtained from Thin-Walled Pollen.

Authors:  Jae Hyeon Park; Jeongeun Seo; Joshua A Jackman; Nam-Joon Cho
Journal:  Sci Rep       Date:  2016-06-15       Impact factor: 4.379

9.  Cryptosporidium and Giardia in surface water: a case study from Michigan, USA to inform management of rural water systems.

Authors:  Erin A Dreelin; Rebecca L Ives; Stephanie Molloy; Joan B Rose
Journal:  Int J Environ Res Public Health       Date:  2014-10-14       Impact factor: 3.390

10.  Chirality-assisted lateral momentum transfer for bidirectional enantioselective separation.

Authors:  Yuzhi Shi; Tongtong Zhu; Tianhang Zhang; Alfredo Mazzulla; Din Ping Tsai; Weiqiang Ding; Ai Qun Liu; Gabriella Cipparrone; Juan José Sáenz; Cheng-Wei Qiu
Journal:  Light Sci Appl       Date:  2020-04-16       Impact factor: 17.782

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  1 in total

1.  Editorial for the Special Issue on Advanced Machine Learning Techniques for Sensing and Imaging Applications.

Authors:  Bihan Wen; Zhangyang Wang
Journal:  Micromachines (Basel)       Date:  2022-06-29       Impact factor: 3.523

  1 in total

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