Literature DB >> 33288916

A hitchhiker's guide to working with large, open-source neuroimaging datasets.

Corey Horien1,2, Stephanie Noble3, Abigail S Greene4,5, Kangjoo Lee3, Daniel S Barron6, Siyuan Gao7, David O'Connor7, Mehraveh Salehi7,8, Javid Dadashkarimi9, Xilin Shen3, Evelyn M R Lake3, R Todd Constable4,3,7,10, Dustin Scheinost11,12,13,14,15.   

Abstract

Large datasets that enable researchers to perform investigations with unprecedented rigor are growing increasingly common in neuroimaging. Due to the simultaneous increasing popularity of open science, these state-of-the-art datasets are more accessible than ever to researchers around the world. While analysis of these samples has pushed the field forward, they pose a new set of challenges that might cause difficulties for novice users. Here we offer practical tips for working with large datasets from the end-user's perspective. We cover all aspects of the data lifecycle: from what to consider when downloading and storing the data to tips on how to become acquainted with a dataset one did not collect and what to share when communicating results. This manuscript serves as a practical guide one can use when working with large neuroimaging datasets, thus dissolving barriers to scientific discovery.

Entities:  

Year:  2020        PMID: 33288916     DOI: 10.1038/s41562-020-01005-4

Source DB:  PubMed          Journal:  Nat Hum Behav        ISSN: 2397-3374


  6 in total

Review 1.  Functional Connectivity of the Chemosenses: A Review.

Authors:  Michael C Farruggia; Robert Pellegrino; Dustin Scheinost
Journal:  Front Syst Neurosci       Date:  2022-06-22

2.  Virtual Connectomic Datasets in Alzheimer's Disease and Aging Using Whole-Brain Network Dynamics Modelling.

Authors:  Lucas Arbabyazd; Kelly Shen; Zheng Wang; Martin Hofmann-Apitius; Petra Ritter; Anthony R McIntosh; Demian Battaglia; Viktor Jirsa
Journal:  eNeuro       Date:  2021-07-06

3.  A protocol for working with open-source neuroimaging datasets.

Authors:  Corey Horien; Kangjoo Lee; Margaret L Westwater; Stephanie Noble; Link Tejavibulya; Teimur Kayani; R Todd Constable; Dustin Scheinost
Journal:  STAR Protoc       Date:  2022-01-08

Review 4.  The role of artificial intelligence in paediatric neuroradiology.

Authors:  Catherine Pringle; John-Paul Kilday; Ian Kamaly-Asl; Stavros Michael Stivaros
Journal:  Pediatr Radiol       Date:  2022-03-26

Review 5.  Decision Models and Technology Can Help Psychiatry Develop Biomarkers.

Authors:  Daniel S Barron; Justin T Baker; Kristin S Budde; Danilo Bzdok; Simon B Eickhoff; Karl J Friston; Peter T Fox; Paul Geha; Stephen Heisig; Avram Holmes; Jukka-Pekka Onnela; Albert Powers; David Silbersweig; John H Krystal
Journal:  Front Psychiatry       Date:  2021-09-09       Impact factor: 4.157

6.  FAIRly big: A framework for computationally reproducible processing of large-scale data.

Authors:  Adina S Wagner; Laura K Waite; Małgorzata Wierzba; Felix Hoffstaedter; Alexander Q Waite; Benjamin Poldrack; Simon B Eickhoff; Michael Hanke
Journal:  Sci Data       Date:  2022-03-11       Impact factor: 6.444

  6 in total

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