Literature DB >> 33286213

A Nonparametric Bayesian Approach to the Rare Type Match Problem.

Giulia Cereda1, Richard D Gill1.   

Abstract

The "rare type match problem" is the situation in which, in a criminal case, the suspect's DNA profile, matching the DNA profile of the crime stain, is not in the database of reference. Ideally, the evaluation of this observed match in the light of the two competing hypotheses (the crime stain has been left by the suspect or by another person) should be based on the calculation of the likelihood ratio and depends on the population proportions of the DNA profiles that are unknown. We propose a Bayesian nonparametric method that uses a two-parameter Poisson Dirichlet distribution as a prior over the ranked population proportions and discards the information about the names of the different DNA profiles. This model is validated using data coming from European Y-STR DNA profiles, and the calculation of the likelihood ratio becomes quite simple thanks to an Empirical Bayes approach for which we provided a motivation.

Entities:  

Keywords:  Bayesian nonparametric; Y-STR; forensic statistics; likelihood ratio; rare type match problem

Year:  2020        PMID: 33286213      PMCID: PMC7516918          DOI: 10.3390/e22040439

Source DB:  PubMed          Journal:  Entropy (Basel)        ISSN: 1099-4300            Impact factor:   2.524


  19 in total

1.  Rediscovery of Good-Turing estimators via Bayesian nonparametrics.

Authors:  Stefano Favaro; Bernardo Nipoti; Yee Whye Teh
Journal:  Biometrics       Date:  2015-07-29       Impact factor: 2.571

2.  Are Gibbs-Type Priors the Most Natural Generalization of the Dirichlet Process?

Authors:  Pierpaolo De Blasi; Stefano Favaro; Antonio Lijoi; Ramsés H Mena; Igor Prünster; Matteo Ruggiero
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2015-02       Impact factor: 6.226

Review 3.  Y chromosome STR typing in crime casework.

Authors:  Lutz Roewer
Journal:  Forensic Sci Med Pathol       Date:  2009-05-20       Impact factor: 2.007

4.  Y chromosome haplotype reference database (YHRD): update.

Authors:  Sascha Willuweit; Lutz Roewer
Journal:  Forensic Sci Int Genet       Date:  2007-03-02       Impact factor: 4.882

5.  Y-profile evidence: Close paternal relatives and mixtures.

Authors:  Mikkel M Andersen; David J Balding
Journal:  Forensic Sci Int Genet       Date:  2018-10-10       Impact factor: 4.882

6.  Modelling the dependence structure of Y-STR haplotypes using graphical models.

Authors:  Mikkel Meyer Andersen; James Curran; Jacob de Zoete; Duncan Taylor; John Buckleton
Journal:  Forensic Sci Int Genet       Date:  2018-07-22       Impact factor: 4.882

7.  The discrete Laplace exponential family and estimation of Y-STR haplotype frequencies.

Authors:  Mikkel Meyer Andersen; Poul Svante Eriksen; Niels Morling
Journal:  J Theor Biol       Date:  2013-03-21       Impact factor: 2.691

8.  Estimation of Y haplotype frequencies with lower order dependencies.

Authors:  Mikkel Meyer Andersen; Amke Caliebe; Katrine Kirkeby; Maria Knudsen; Ninna Vihrs; James M Curran
Journal:  Forensic Sci Int Genet       Date:  2019-12-24       Impact factor: 4.882

9.  The interpretation of lineage markers in forensic DNA testing.

Authors:  J S Buckleton; M Krawczak; B S Weir
Journal:  Forensic Sci Int Genet       Date:  2011-03       Impact factor: 4.882

10.  A global analysis of Y-chromosomal haplotype diversity for 23 STR loci.

Authors:  Josephine Purps; Sabine Siegert; Sascha Willuweit; Marion Nagy; Cíntia Alves; Renato Salazar; Sheila M T Angustia; Lorna H Santos; Katja Anslinger; Birgit Bayer; Qasim Ayub; Wei Wei; Yali Xue; Chris Tyler-Smith; Miriam Baeta Bafalluy; Begoña Martínez-Jarreta; Balazs Egyed; Beate Balitzki; Sibylle Tschumi; David Ballard; Denise Syndercombe Court; Xinia Barrantes; Gerhard Bäßler; Tina Wiest; Burkhard Berger; Harald Niederstätter; Walther Parson; Carey Davis; Bruce Budowle; Helen Burri; Urs Borer; Christoph Koller; Elizeu F Carvalho; Patricia M Domingues; Wafaa Takash Chamoun; Michael D Coble; Carolyn R Hill; Daniel Corach; Mariela Caputo; Maria E D'Amato; Sean Davison; Ronny Decorte; Maarten H D Larmuseau; Claudio Ottoni; Olga Rickards; Di Lu; Chengtao Jiang; Tadeusz Dobosz; Anna Jonkisz; William E Frank; Ivana Furac; Christian Gehrig; Vincent Castella; Branka Grskovic; Cordula Haas; Jana Wobst; Gavrilo Hadzic; Katja Drobnic; Katsuya Honda; Yiping Hou; Di Zhou; Yan Li; Shengping Hu; Shenglan Chen; Uta-Dorothee Immel; Rüdiger Lessig; Zlatko Jakovski; Tanja Ilievska; Anja E Klann; Cristina Cano García; Peter de Knijff; Thirsa Kraaijenbrink; Aikaterini Kondili; Penelope Miniati; Maria Vouropoulou; Lejla Kovacevic; Damir Marjanovic; Iris Lindner; Issam Mansour; Mouayyad Al-Azem; Ansar El Andari; Miguel Marino; Sandra Furfuro; Laura Locarno; Pablo Martín; Gracia M Luque; Antonio Alonso; Luís Souto Miranda; Helena Moreira; Natsuko Mizuno; Yasuki Iwashima; Rodrigo S Moura Neto; Tatiana L S Nogueira; Rosane Silva; Marina Nastainczyk-Wulf; Jeanett Edelmann; Michael Kohl; Shengjie Nie; Xianping Wang; Baowen Cheng; Carolina Núñez; Marian Martínez de Pancorbo; Jill K Olofsson; Niels Morling; Valerio Onofri; Adriano Tagliabracci; Horolma Pamjav; Antonia Volgyi; Gusztav Barany; Ryszard Pawlowski; Agnieszka Maciejewska; Susi Pelotti; Witold Pepinski; Monica Abreu-Glowacka; Christopher Phillips; Jorge Cárdenas; Danel Rey-Gonzalez; Antonio Salas; Francesca Brisighelli; Cristian Capelli; Ulises Toscanini; Andrea Piccinini; Marilidia Piglionica; Stefania L Baldassarra; Rafal Ploski; Magdalena Konarzewska; Emila Jastrzebska; Carlo Robino; Antti Sajantila; Jukka U Palo; Evelyn Guevara; Jazelyn Salvador; Maria Corazon De Ungria; Jae Joseph Russell Rodriguez; Ulrike Schmidt; Nicola Schlauderer; Pekka Saukko; Peter M Schneider; Miriam Sirker; Kyoung-Jin Shin; Yu Na Oh; Iulia Skitsa; Alexandra Ampati; Tobi-Gail Smith; Lina Solis de Calvit; Vlastimil Stenzl; Thomas Capal; Andreas Tillmar; Helena Nilsson; Stefania Turrina; Domenico De Leo; Andrea Verzeletti; Venusia Cortellini; Jon H Wetton; Gareth M Gwynne; Mark A Jobling; Martin R Whittle; Denilce R Sumita; Paulina Wolańska-Nowak; Rita Y Y Yong; Michael Krawczak; Michael Nothnagel; Lutz Roewer
Journal:  Forensic Sci Int Genet       Date:  2014-04-28       Impact factor: 4.882

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