Literature DB >> 33285908

Phase Transitions in Spatial Connectivity during Influenza Pandemics.

Nathan Harding1, Richard Spinney1, Mikhail Prokopenko1,2.   

Abstract

We investigated phase transitions in spatial connectivity during influenza pandemics, relating epidemic thresholds to the formation of clusters defined in terms of average infection. We employed a large-scale agent-based model of influenza spread at a national level: the Australian Census-based Epidemic Model (AceMod). In using the AceMod simulation framework, which leverages the 2016 Australian census data and generates a surrogate population of ≈23.4 million agents, we analysed the spread of simulated epidemics across geographical regions defined according to the Australian Statistical Geography Standard. We considered adjacent geographic regions with above average prevalence to be connected, and the resultant spatial connectivity was then analysed at specific time points of the epidemic. Specifically, we focused on the times when the epidemic prevalence peaks, either nationally (first wave) or at a community level (second wave). Using the percolation theory, we quantified the connectivity and identified critical regimes corresponding to abrupt changes in patterns of the spatial distribution of infection. The analysis of criticality is confirmed by computing Fisher Information in a model-independent way. The results suggest that the post-critical phase is characterised by different spatial patterns of infection developed during the first or second waves (distinguishing urban and rural epidemic peaks).

Entities:  

Keywords:  agent-based modelling; critical dynamics; epidemic modelling; epidemiology; phase transitions

Year:  2020        PMID: 33285908      PMCID: PMC7516543          DOI: 10.3390/e22020133

Source DB:  PubMed          Journal:  Entropy (Basel)        ISSN: 1099-4300            Impact factor:   2.524


  32 in total

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Authors:  R Pastor-Satorras; A Vespignani
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Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

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Authors:  Dirk Brockmann; Dirk Helbing
Journal:  Science       Date:  2013-12-13       Impact factor: 47.728

5.  FluTE, a publicly available stochastic influenza epidemic simulation model.

Authors:  Dennis L Chao; M Elizabeth Halloran; Valerie J Obenchain; Ira M Longini
Journal:  PLoS Comput Biol       Date:  2010-01-29       Impact factor: 4.475

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Authors:  Sen Pei; Sasikiran Kandula; Wan Yang; Jeffrey Shaman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-26       Impact factor: 11.205

7.  On critical dynamics and thermodynamic efficiency of urban transformations.

Authors:  Emanuele Crosato; Ramil Nigmatullin; Mikhail Prokopenko
Journal:  R Soc Open Sci       Date:  2018-10-17       Impact factor: 2.963

8.  Network properties of salmonella epidemics.

Authors:  Oliver M Cliff; Vitali Sintchenko; Tania C Sorrell; Kiranmayi Vadlamudi; Natalia McLean; Mikhail Prokopenko
Journal:  Sci Rep       Date:  2019-04-16       Impact factor: 4.379

9.  Improving emergency preparedness and response in the Asia-Pacific.

Authors:  Ben J Marais; Stephanie Williams; Ailan Li; Roderico Ofrin; Angela Merianos; Joel Negin; Jenny Firman; Robin Davies; Tania Sorrell
Journal:  BMJ Glob Health       Date:  2019-01-29

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Authors:  Rustom Antia; Roland R Regoes; Jacob C Koella; Carl T Bergstrom
Journal:  Nature       Date:  2003-12-11       Impact factor: 49.962

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  1 in total

Review 1.  Data-driven methods for present and future pandemics: Monitoring, modelling and managing.

Authors:  Teodoro Alamo; Daniel G Reina; Pablo Millán Gata; Victor M Preciado; Giulia Giordano
Journal:  Annu Rev Control       Date:  2021-06-29       Impact factor: 6.091

  1 in total

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