Literature DB >> 33279995

Text mining approaches for dealing with the rapidly expanding literature on COVID-19.

Lucy Lu Wang1, Kyle Lo1.   

Abstract

More than 50 000 papers have been published about COVID-19 since the beginning of 2020 and several hundred new papers continue to be published every day. This incredible rate of scientific productivity leads to information overload, making it difficult for researchers, clinicians and public health officials to keep up with the latest findings. Automated text mining techniques for searching, reading and summarizing papers are helpful for addressing information overload. In this review, we describe the many resources that have been introduced to support text mining applications over the COVID-19 literature; specifically, we discuss the corpora, modeling resources, systems and shared tasks that have been introduced for COVID-19. We compile a list of 39 systems that provide functionality such as search, discovery, visualization and summarization over the COVID-19 literature. For each system, we provide a qualitative description and assessment of the system's performance, unique data or user interface features and modeling decisions. Many systems focus on search and discovery, though several systems provide novel features, such as the ability to summarize findings over multiple documents or linking between scientific articles and clinical trials. We also describe the public corpora, models and shared tasks that have been introduced to help reduce repeated effort among community members; some of these resources (especially shared tasks) can provide a basis for comparing the performance of different systems. Finally, we summarize promising results and open challenges for text mining the COVID-19 literature.
© The Author(s) 2020. Published by Oxford University Press.

Entities:  

Keywords:  CORD-19; COVID-19; information extraction; information retrieval; natural language processing; question answering; shared tasks; summarization; text mining

Mesh:

Year:  2021        PMID: 33279995      PMCID: PMC7799291          DOI: 10.1093/bib/bbaa296

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  12 in total

1.  Harnessing the Power of Smart and Connected Health to Tackle COVID-19: IoT, AI, Robotics, and Blockchain for a Better World.

Authors:  Farshad Firouzi; Bahar Farahani; Mahmoud Daneshmand; Kathy Grise; Jaeseung Song; Roberto Saracco; Lucy Lu Wang; Kyle Lo; Plamen Angelov; Eduardo Soares; Po-Shen Loh; Zeynab Talebpour; Reza Moradi; Mohsen Goodarzi; Haleh Ashraf; Mohammad Talebpour; Alireza Talebpour; Luca Romeo; Rupam Das; Hadi Heidari; Dana Pasquale; James Moody; Chris Woods; Erich S Huang; Payam Barnaghi; Majid Sarrafzadeh; Ron Li; Kristen L Beck; Olexandr Isayev; Nakmyoung Sung; Alan Luo
Journal:  IEEE Internet Things J       Date:  2021-04-19       Impact factor: 10.238

2.  Automatic data extraction to support meta-analysis statistical analysis: a case study on breast cancer.

Authors:  Faith Wavinya Mutinda; Kongmeng Liew; Shuntaro Yada; Shoko Wakamiya; Eiji Aramaki
Journal:  BMC Med Inform Decis Mak       Date:  2022-06-18       Impact factor: 3.298

3.  DILI C : An AI-Based Classifier to Search for Drug-Induced Liver Injury Literature.

Authors:  Sanjay Rathee; Meabh MacMahon; Anika Liu; Nicholas M Katritsis; Gehad Youssef; Woochang Hwang; Lilly Wollman; Namshik Han
Journal:  Front Genet       Date:  2022-06-29       Impact factor: 4.772

4.  A Web Application for Biomedical Text Mining of Scientific Literature Associated with Coronavirus-Related Syndromes: Coronavirus Finder.

Authors:  Dagoberto Armenta-Medina; Aniel Jessica Leticia Brambila-Tapia; Sabino Miranda-Jiménez; Edel Rafael Rodea-Montero
Journal:  Diagnostics (Basel)       Date:  2022-04-02

5.  Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining.

Authors:  Evangelos Karatzas; Fotis A Baltoumas; Ioannis Kasionis; Despina Sanoudou; Aristides G Eliopoulos; Theodosios Theodosiou; Ioannis Iliopoulos; Georgios A Pavlopoulos
Journal:  Biomolecules       Date:  2022-03-30

6.  Gene Identification and Potential Drug Therapy for Drug-Resistant Melanoma with Bioinformatics and Deep Learning Technology.

Authors:  Muge Liu; Yingbin Xu
Journal:  Dis Markers       Date:  2022-07-23       Impact factor: 3.464

Review 7.  Searching for scientific evidence in a pandemic: An overview of TREC-COVID.

Authors:  Kirk Roberts; Tasmeer Alam; Steven Bedrick; Dina Demner-Fushman; Kyle Lo; Ian Soboroff; Ellen Voorhees; Lucy Lu Wang; William R Hersh
Journal:  J Biomed Inform       Date:  2021-07-08       Impact factor: 8.000

8.  Classifying domain-specific text documents containing ambiguous keywords.

Authors:  Kamran Karimi; Sergei Agalakov; Cheryl A Telmer; Thomas R Beatman; Troy J Pells; Bradley Im Arshinoff; Carolyn J Ku; Saoirse Foley; Veronica F Hinman; Charles A Ettensohn; Peter D Vize
Journal:  Database (Oxford)       Date:  2021-09-29       Impact factor: 3.451

9.  COVID-19 Drug Repurposing: A Network-Based Framework for Exploring Biomedical Literature and Clinical Trials for Possible Treatments.

Authors:  Ahmed Abdeen Hamed; Tamer E Fandy; Karolina L Tkaczuk; Karin Verspoor; Byung Suk Lee
Journal:  Pharmaceutics       Date:  2022-03-04       Impact factor: 6.321

Review 10.  Advances in the computational landscape for repurposed drugs against COVID-19.

Authors:  Illya Aronskyy; Yosef Masoudi-Sobhanzadeh; Antonio Cappuccio; Elena Zaslavsky
Journal:  Drug Discov Today       Date:  2021-07-30       Impact factor: 7.851

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