Literature DB >> 33279834

Exome-wide rare variant analysis in familial essential tremor.

Monica Diez-Fairen1, Gabrielle Houle2, Sara Ortega-Cubero3, Sara Bandres-Ciga4, Ignacio Alvarez1, Maria Carcel1, Laura Ibañez5, Maria Victoria Fernandez5, John P Budde5, Jean-Rémi Trotta6, Raúl Tonda6, Jessica X Chong7, Michael J Bamshad8, Deborah A Nickerson9, Miquel Aguilar1, Juan P Tartari1, Alexandre Gironell10, Elena García-Martín11, Jose Ag Agundez11, Hortensia Alonso-Navarro12, Felix Javier Jimenez-Jimenez12, Manel Fernandez13, Francesc Valldeoriola14, Maria Jose Marti14, Eduard Tolosa14, Francisco Coria15, Maria A Pastor16, Carles Vilariño-Güell17, Alex Rajput18, Patrick A Dion19, Carlos Cruchaga5, Guy A Rouleau20, Pau Pastor21.   

Abstract

INTRODUCTION: Essential tremor (ET) is one of the most common movement disorders. Despite its high prevalence and heritability, its genetic etiology remains elusive with only a few susceptibility genes identified and poorly replicated. Our aim was to find novel candidate genes involved in ET predisposition through whole exome sequencing.
METHODS: We studied eight multigenerational families (N = 40 individuals) with an autosomal-dominant inheritance using a comprehensive strategy combining whole exome sequencing followed by case-control association testing of prioritized variants in a separate cohort comprising 521 ET cases and 596 controls. We further performed gene-based burden analyses in an additional dataset comprising 789 ET patients and 770 healthy individuals to investigate whether there was an enrichment of rare deleterious variants within our candidate genes.
RESULTS: Fifteen variants co-segregated with disease status in at least one of the families, among which rs749875462 in CCDC183, rs535864157 in MMP10 and rs114285050 in GPR151 showed a nominal association with ET. However, we found no significant enrichment of rare variants within these genes in cases compared with controls. Interestingly, MMP10 protein is involved in the inflammatory response to neuronal damage and has been previously associated with other neurological disorders.
CONCLUSIONS: We prioritized a set of promising genes, especially MMP10, for further genetic and functional studies in ET. Our study suggests that rare deleterious coding variants that markedly increase susceptibility to ET are likely to be found in many genes. Future studies are needed to replicate and further infer biological mechanisms and potential disease causality for our identified genes.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Essential tremor; Genetic risk; MMP10; Rare variants; WES

Mesh:

Substances:

Year:  2020        PMID: 33279834      PMCID: PMC7856267          DOI: 10.1016/j.parkreldis.2020.11.021

Source DB:  PubMed          Journal:  Parkinsonism Relat Disord        ISSN: 1353-8020            Impact factor:   4.891


  39 in total

Review 1.  Brain circuits and neurochemical systems in essential tremor: insights into current and future pharmacotherapeutic approaches.

Authors:  Sara M Schaefer; Ana Vives Rodriguez; Elan D Louis
Journal:  Expert Rev Neurother       Date:  2017-12-15       Impact factor: 4.618

2.  SCN4A pore mutation pathogenetically contributes to autosomal dominant essential tremor and may increase susceptibility to epilepsy.

Authors:  Alberto Bergareche; Marcin Bednarz; Elena Sánchez; Catharine E Krebs; Javier Ruiz-Martinez; Patricia De La Riva; Vladimir Makarov; Ana Gorostidi; Karin Jurkat-Rott; Jose Felix Marti-Masso; Coro Paisán-Ruiz
Journal:  Hum Mol Genet       Date:  2015-10-01       Impact factor: 6.150

3.  Mitochondrial serine protease HTRA2 p.G399S in a kindred with essential tremor and Parkinson disease.

Authors:  Hilal Unal Gulsuner; Suleyman Gulsuner; Fatma Nazli Mercan; Onur Emre Onat; Tom Walsh; Hashem Shahin; Ming K Lee; Okan Dogu; Tulay Kansu; Haluk Topaloglu; Bulent Elibol; Cenk Akbostanci; Mary-Claire King; Tayfun Ozcelik; Ayse B Tekinay
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-24       Impact factor: 11.205

4.  A gene (ETM) for essential tremor maps to chromosome 2p22-p25.

Authors:  J J Higgins; L T Pho; L E Nee
Journal:  Mov Disord       Date:  1997-11       Impact factor: 10.338

5.  Demographic history and rare allele sharing among human populations.

Authors:  Simon Gravel; Brenna M Henn; Ryan N Gutenkunst; Amit R Indap; Gabor T Marth; Andrew G Clark; Fuli Yu; Richard A Gibbs; Carlos D Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

6.  Variant in the sequence of the LINGO1 gene confers risk of essential tremor.

Authors:  Hreinn Stefansson; Stacy Steinberg; Hjorvar Petursson; Omar Gustafsson; Iris H Gudjonsdottir; Gudrun A Jonsdottir; Stefan T Palsson; Thorlakur Jonsson; Jona Saemundsdottir; Gyda Bjornsdottir; Yvonne Böttcher; Theodora Thorlacius; Dietrich Haubenberger; Alexander Zimprich; Eduard Auff; Christoph Hotzy; Claudia M Testa; Lisa A Miyatake; Ami R Rosen; Kristleifur Kristleifsson; David Rye; Friedrich Asmus; Ludger Schöls; Martin Dichgans; Finnbogi Jakobsson; John Benedikz; Unnur Thorsteinsdottir; Jeffrey Gulcher; Augustine Kong; Kari Stefansson
Journal:  Nat Genet       Date:  2009-02-01       Impact factor: 38.330

Review 7.  Consensus Statement on the classification of tremors. from the task force on tremor of the International Parkinson and Movement Disorder Society.

Authors:  Kailash P Bhatia; Peter Bain; Nin Bajaj; Rodger J Elble; Mark Hallett; Elan D Louis; Jan Raethjen; Maria Stamelou; Claudia M Testa; Guenther Deuschl
Journal:  Mov Disord       Date:  2017-11-30       Impact factor: 10.338

8.  Identification of candidate genes for familial early-onset essential tremor.

Authors:  Xinmin Liu; Nora Hernandez; Sergey Kisselev; Aris Floratos; Ashley Sawle; Iuliana Ionita-Laza; Ruth Ottman; Elan D Louis; Lorraine N Clark
Journal:  Eur J Hum Genet       Date:  2015-10-28       Impact factor: 4.246

9.  FUS-linked essential tremor associated with motor dysfunction in Drosophila.

Authors:  Murni Tio; Rujing Wen; Yih Lin Lim; Huashan Wang; Shuo-Chien Ling; Yi Zhao; Eng-King Tan
Journal:  Hum Genet       Date:  2016-07-09       Impact factor: 4.132

10.  Whole genome sequencing and rare variant analysis in essential tremor families.

Authors:  Zagaa Odgerel; Shilpa Sonti; Nora Hernandez; Jemin Park; Ruth Ottman; Elan D Louis; Lorraine N Clark
Journal:  PLoS One       Date:  2019-08-12       Impact factor: 3.240

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  3 in total

1.  Gene Expression Analysis of Laser-Captured Purkinje Cells in the Essential Tremor Cerebellum.

Authors:  Regina T Martuscello; Karthigayini Sivaprakasam; Whitney Hartstone; Sheng-Han Kuo; Genevieve Konopka; Elan D Louis; Phyllis L Faust
Journal:  Cerebellum       Date:  2022-10-15       Impact factor: 3.648

Review 2.  Coiled-Coil Domain-Containing (CCDC) Proteins: Functional Roles in General and Male Reproductive Physiology.

Authors:  Patra Priyadarshini Priyanka; Suresh Yenugu
Journal:  Reprod Sci       Date:  2021-05-03       Impact factor: 3.060

Review 3.  Genomic Markers for Essential Tremor.

Authors:  Félix Javier Jiménez-Jiménez; Hortensia Alonso-Navarro; Elena García-Martín; Ignacio Álvarez; Pau Pastor; José A G Agúndez
Journal:  Pharmaceuticals (Basel)       Date:  2021-05-27
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