Literature DB >> 33279649

Comparative genomics and molecular adaptational analysis of Arthrobacter from Sikkim Himalaya provided insights into its survivability under multiple high-altitude stress.

Srijana Mukhia1, Abhishek Khatri2, Vishal Acharya3, Rakshak Kumar4.   

Abstract

Arthrobacter is a dominant aerobic bacterium under the class Actinobacteria, known for its nutritionally versatile nature and wide prevalence in stressful environments. In the current study representative two strains of Arthrobacter, ERGS1:01 and ERGS4:06, with efficient survivability under high altitude stress conditions were selected for comparative genomic studies with their mesophilic counterparts. Physiological analysis and genome insights supported the survival of these strains under multiple high-altitude stress conditions. Molecular cold-adaptation and substitution analysis of the studied strains supported the incidence of more cold-adapted proteins for functionality at low temperatures. Studied strains preferred amino acids like serine, asparagine, lysine, tryptophan for favoring increased flexibility supporting their broad temperature survivability. To the best of our knowledge, this is the first molecular cold adaptation analysis performed for the genus Arthrobacter and has revealed that 'aromaticity', one of the cold-adaptor indicators, should be carefully considered while evaluating cold adaptation strategies in psychrotrophic/psychrophilic bacteria.
Copyright © 2020 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aromaticity index; Cold-adaptation score; Freeze-resistant; Freeze-thaw resistant; Molecular cold-adaptation; UV-C resistant

Mesh:

Substances:

Year:  2020        PMID: 33279649     DOI: 10.1016/j.ygeno.2020.12.001

Source DB:  PubMed          Journal:  Genomics        ISSN: 0888-7543            Impact factor:   5.736


  6 in total

1.  Metagenomic views on taxonomic and functional profiles of the Himalayan Tsomgo cold lake and unveiling its deterzome potential.

Authors:  Ashutosh Kumar Singh; Megha Kumari; Nitish Sharma; Amit Kumar Rai; Sudhir P Singh
Journal:  Curr Genet       Date:  2022-08-05       Impact factor: 2.695

Review 2.  Industrial applications of cold-adapted enzymes: challenges, innovations and future perspective.

Authors:  Anil Kumar; Srijana Mukhia; Rakshak Kumar
Journal:  3 Biotech       Date:  2021-09-06       Impact factor: 2.893

3.  Positive end-expiratory pressure and risk of postoperative pulmonary complications in patients living at high altitudes and undergoing surgery at low altitudes: a single-centre, retrospective observational study in China.

Authors:  Kaixi Shang; Zongjing Xia; Xiaoli Ye; Zhuoning Li; Chongcong Gong
Journal:  BMJ Open       Date:  2022-06-14       Impact factor: 3.006

4.  Multilocus sequence based identification and adaptational strategies of Pseudomonas sp. from the supraglacial site of Sikkim Himalaya.

Authors:  Srijana Mukhia; Anil Kumar; Poonam Kumari; Rakshak Kumar; Sanjay Kumar
Journal:  PLoS One       Date:  2022-01-24       Impact factor: 3.240

5.  Diversity and bioprospecting for industrial hydrolytic enzymes of microbial communities isolated from deserted areas of south-east Morocco.

Authors:  Amina Manni; Abdelkarim Filali-Maltouf
Journal:  AIMS Microbiol       Date:  2022-01-20

6.  Complete Genome Sequencing of Polar Arthrobacter sp. PAMC25284, Copper Tolerance Potential Unraveled with Genomic Analysis.

Authors:  Jayram Karmacharya; Prasansah Shrestha; So-Ra Han; Hyun Park; Tae-Jin Oh
Journal:  Int J Microbiol       Date:  2022-08-25
  6 in total

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