| Literature DB >> 33277604 |
Qun Li1, Guoying Chang1, Lei Yin2, Juan Li1, Xiaodong Huang1, Yongnian Shen1, Guoqiang Li3, Yufei Xu3, Jian Wang4, Xiumin Wang5.
Abstract
Cornelia de Lange Syndrome (CdLS) is a rare genetic disorder, which causes a range of physical, cognitive, and medical challenges. To retrospectively analyze the clinical characteristics and genetic variations of Chinese patients, and to provide experience for further diagnosis and treatment of CdLS in Chinese children, we identified 15 unrelated Chinese children who presented with unusual facial features, short stature, developmental delay, limb abnormalities, and a wide range of health conditions. In this study, targeted-next generation sequencing was used to screen for causal variants and the clinically relevant variants were subsequently verified using Sanger sequencing. DNA sequencing identified 15 genetic variations, including 11 NIPBL gene variants, two SMC1A gene variants, one RAD21 gene variant, and one HDAC8 variant. The phenotype of these patients was summarized and differences between this cohort and another four groups were compared. The clinical manifestations of the patients in this cohort were mostly consistent with other ethnicities, but several clinical features in our cohort had different frequencies compared with other groups. We identified 15 deleterious variants of which 11 were novel. Variants in the NIPBL gene were the most common cause in our cohort. Our study not only expands upon the spectrum of genetic variations in CdLS, but also broadens our understanding of the clinical features of CdLS.Entities:
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Year: 2020 PMID: 33277604 PMCID: PMC7718889 DOI: 10.1038/s41598-020-78205-5
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Variants identified in our patients.
| Case | Variants | Location | Type | Homo/Het | Inherited or De novo | Novel or reported | ACMG classification |
|---|---|---|---|---|---|---|---|
| 1 | Intron 34 | Splicing | Het | De novo | Novel | P | |
| 2 | Intro 39 | Splicing | Het | De novo | Reported | P | |
| 3 | Intron 42 | Splicing | Het | De novo | Reported | LP | |
| 4 | 5′UTR regions | Splicing | Het | De novo | Reported | LP | |
| 5 | Exon 30 | Missense | Het | De novo | Novel | P | |
| 6 | Exon 30 | Missense | Het | De novo | Novel | LP | |
| 7 | Exon 39 | Missense | Het | De novo | Novel | LP | |
| 8 | Exon 40 | Frameshift | Het | NA | Novel | LP | |
| 9 | Exon 4 | Frameshift | Het | De novo | Novel | P | |
| 10 | Exon 12 | Nonsense | Het | De novo | Novel | P | |
| 11 | Exon 19 | Nonsense | Het | De novo | Novel | P | |
| 12 | Exon 15 | Missense | Hemizygote | Mother | reported | LP | |
| 13 | Exon 6 | Missense | Hemizygote | De novo | Novel | LP | |
| 14 | Exon 12 | Frameshift | Het | NA | Novel | LP | |
| 15 | Intron 6 | Splicing | Het | De novo | Novel | P |
Homo homozygosis, Het heterozygosis, NA not available, LP likely pathogenic, P pathogenic.
Figure 1Variants identified in the P1-6 (a–f) and P8-15 (g–n).
Selected clinical data in our cohort of 15 patients with CdLS (n = 15).
| Clinical findings | N/Total(%) of subjects | ||||
|---|---|---|---|---|---|
| Total | |||||
| Microcephaly | 14 (93.3%) | 11 | 2 | 0 | 1 |
| Synophrys | 8 (53.3%) | 7 | 1 | 0 | 0 |
| Highly arched eyebrow; thick eyebrow | 13 (86.7%) | 11 | 2 | 0 | 0 |
| Long eyelashes | 14 (93.3%) | 11 | 2 | 1 | 0 |
| Concave nasal ridge | 10 (66.7%) | 9 | 1 | 0 | 0 |
| Anteverted nares | 11 (73.3%) | 10 | 1 | 0 | 0 |
| Short nose | 9 (60.0%) | 9 | 0 | 0 | 0 |
| Long philtrum; smooth philtrum | 11 (73.3%) | 10 | 1 | 0 | 0 |
| Thin upper lip vermilion | 10 (66.7%) | 9 | 1 | 0 | 0 |
| Downturned corners of mouth | 12 (80.0%) | 11 | 1 | 0 | 0 |
| High palate | 12 (80.0%) | 9 | 1 | 1 | 1 |
| Cleft palate | 2 (13.3%) | 1 | 1 | 0 | 0 |
| Widely spaced teeth | 2 (13.3%) | 2 | 0 | 0 | 0 |
| Micrognathia | 11 (73.3%) | 10 | 1 | 0 | 0 |
| Ptosis | 5 (33.3%) | 5 | 0 | 0 | 0 |
| Intrauterine growth retardation | 8 (53.3%) | 7 | 1 | 0 | 0 |
| Short stature | 14 (93.3%) | 11 | 1 | 1 | 1 |
| Global developmental delay; intellectual disability | 14 (93.3%) | 10 | 2 | 1 | 1 |
| Oligodactyly | 1 (6.7%) | 1 | 0 | 0 | 0 |
| Small hand | 11 (73.3%) | 9 | 1 | 1 | 0 |
| 5th finger clinodactyly; short 5th finger | 10 (66.7%) | 8 | 0 | 1 | 1 |
| 2–3 toe syndactyly | 2 (13.3%) | 2 | 0 | 0 | 0 |
| Single transverse palmar crease | 6 (40.0%) | 5 | 1 | 0 | 0 |
| Pectus excavatum | 2 (13.3%) | 2 | 0 | 0 | 0 |
| Hypertrichosis | 3 (20.0%) | 3 | 0 | 0 | 0 |
| Seizures | 1 (6.7%) | 1 | 0 | 0 | 0 |
| Abnormal muscle tone | 1 (6.7%) | 0 | 1 | 0 | 0 |
| Hearing impairment | 3 (20.0%) | 3 | 0 | 0 | 0 |
| Otitis media | 2 (13.3%) | 2 | 0 | 0 | 0 |
| 7 (46.7%) | 5 | 2 | 0 | 0 | |
| Atrial septal defect | 3 (20.0%) | 2 | 1 | 0 | 0 |
| Pulmonic stenosis | 3 (20.0%) | 2 | 1 | 0 | 0 |
| Ventricular septal defect | 1 (6.7%) | 1 | 0 | 0 | 0 |
| Coronary-pulmonary artery fistula | 1 (6.7%) | 1 | 0 | 0 | 0 |
| Patent ductus arteriosus | 1 (6.7%) | 1 | 0 | 0 | 0 |
| Patent foramen ovale | 1 (6.7%) | 0 | 1 | 0 | 0 |
| 7 (46.7%) | 6 | 1 | 0 | 0 | |
| Abnormality of kidney | 2 (13.3%) | 2 | 0 | 0 | 0 |
| Cryptorchidism | 5/9 (55.6%) | 4 | 1 | 0 | 0 |
| Micropenis | 2/9 (22.2%) | 2 | 0 | 0 | 0 |
| Hypospadias | 2/9 (22.2%) | 2 | 0 | 0 | 0 |
| 4 (26.7%) | 4 | 0 | 0 | 0 | |
Clinical features of our cohort compared with four other groups.
| Our study | Africa | Asia | Latin America | Middle East | Chi-square value | p-Values | |
|---|---|---|---|---|---|---|---|
| Average age (years) | 4 | 1.4 | 4.3 | 6.5 | 2.6 | ||
| Age range | 3m–10y2m | 2w–9y | 2w–12y | 1d–37y | 3m–8y | ||
| 11/15 (73%) | 6/6 (100%) | 6/8 (75%) | 77% | 3/5 (60%) | |||
| 1/15 (7%) | 0 | 2/8 (25%) | 18% | 1/5 (20%) | |||
| 2/15 (13%) | 0 | 0 | 5% | 1/5 (20%) | |||
| 1/15 (7%) | 0 | 0 | 0 | 0 | |||
| Synophrys | 8/15 (53.3%) | 14/14 (100.0%)a | 21/23 (91.3%) | 22/22 (100.0%)a | 7/8 (87.5%) | 16.357 | < 0.001 |
| Arched eyebrows | 13/15 (86.7%) | 14/14 (100.0%) | 21/23 (91.3%) | 22/22 (100.0%) | 8/8 (100.0%) | 4.058 | 0.286 |
| Long eyeashes | 14/15 (93.3%) | 14/14 (100.0%) | 23/23 (100.0%) | 22/22 (100.0%) | 6/8 (75.0%) | 7.486 | 0.014 |
| Short nose/anteverted nares | 11/15 (73.3%) | 14/14 (100.0%) | 19/23 (82.6%) | 22/22 (100.0%) | 7/8 (87.5%) | 8.738 | 0.028 |
| Long philtrum | 11/15 (73.3%) | 14/14 (100.0%) | 23/23 (100.0%) | 22/22 (100.0%) | 8/8 (100.0%) | 9.995 | 0.004 |
| Ptosis | 5/15 (33.3%) | 10/14 (71.4%) | 9/23 (39.1%) | 8/22 (36.4%) | 0/8 (0.0%) | 11.612 | 0.018 |
| Palate anomalies | 2/15 (13.3%) | 3/13 (23.1%) | 2/18 (11.1%) | 6/22 (27.3%) | 4/5 (80.0%)a | 9.447 | 0.038 |
| Micrognathia | 11/15 (73.3%) | 11/13 (84.6%) | 10/18 (55.6%) | 13/22 (59.1%) | 2/5 (40.0%) | 5.011 | 0.285 |
| Clinodactyly | 10/15 (66.7%) | 12/13 (92.3%) | 10/18 (55.6%) | 10/22 (45.5%) | 3/5 (60.0%) | 8.472 | 0.068 |
| Hypertrichosis | 3/15 (20.0%) | 11/13 (84.6%)a | 12/18 (66.7%) | 15/22 (68.2%)a | 5/5 (100.0%)a | 16.713 | 0.001 |
| Growth deficiency | 14/15 (93.3%) | 13/13 (100.0%) | 18/18 (100.0%) | 22/22 (100.0%) | 4/5 (80.0%) | 5.688 | 0.057 |
| Hearing loss | 1/15 (6.7%) | 9/13 (69.2%)a | 4/18 (22.2%) | 7/22 (31.8%) | 3/5 (60.0%) | 14.644 | 0.004 |
| Congenital heart disease | 7/15 (46.7%) | 3/13 (23.1%) | 4/18 (22.2%) | 9/22 (40.9%) | 2/5 (40.0%) | 3.478 | 0.500 |
| Renal anomalies | 2/15 (13.3%) | 4/13 (30.8%) | 2/18 (11.1%) | 2/22 (9.1%) | 1/5 (20.0%) | 3.482 | 0.465 |
| Neurologic abnormalities | 2/15 (13.3%) | 1/13 (7.7%) | 1/18 (5.6%) | 1/22 (4.5%) | 0/5 (0.0%) | 1.732 | 0.902 |
aIndicates that the incidence of phenotype was statistically significant compared with our cohort. The four other groups (African and African American, Asian, Latin American, and the Middle East) of features data were from the Dowsett et al.[14].