Literature DB >> 33276679

Comparative Transcriptome Analysis of Toxic and Non-Toxic Nassarius Communities and Identification of Genes Involved in TTX-Adaptation.

Shanmei Zou1.   

Abstract

Nassarius has caused serious people poisoning and death incident as a popular food due to tetrodotoxin (TTX) accumulation in their body. Understanding the genetic basis of tetrodotoxin (TTX) transformation and resistance in animals could lead to significant insights into adaptive evolution to toxins and toxin poisoning cures in medicine. Here we performed comparative transcriptome analysis for toxic and non-toxic communities in Nassarius succinctus and Nassarius variciferus to reveal their genetic expression and mutation patterns. For both species, the cellular and metabolic process, and binding and catalytic activity accounted for the top classification categories, and the toxic communities generally produced more up-regulated genes than non-toxic communities. Most unigenes and different expression genes were related to disease, e.g., heat shock protein and tissue factor pathway inhibitors, which involve detoxification and coagulation. In mutation levels, the sodium channel gene of N. succinctus had one amino acid mutation "L", which is different from that of other animals. In conclusion, the comparative transcriptome analysis of different species and populations provided an important genetic basis for adaptive evolution to toxins, health and toxin poisoning cure research for TTX in marine gastropoda mollusk. Future studies will focus on the action mechanism of the important functional gene for TTX accumulation and resistance.

Entities:  

Keywords:  Nassarius; TTX; comparative transcriptome analysis; genes; health

Mesh:

Substances:

Year:  2020        PMID: 33276679      PMCID: PMC7761612          DOI: 10.3390/toxins12120761

Source DB:  PubMed          Journal:  Toxins (Basel)        ISSN: 2072-6651            Impact factor:   4.546


  33 in total

1.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data.

Authors:  Aaron McKenna; Matthew Hanna; Eric Banks; Andrey Sivachenko; Kristian Cibulskis; Andrew Kernytsky; Kiran Garimella; David Altshuler; Stacey Gabriel; Mark Daly; Mark A DePristo
Journal:  Genome Res       Date:  2010-07-19       Impact factor: 9.043

2.  Occurrence and effects of organotins on adult common whelk (Buccinum undatum) (Mollusca, Gastropoda) in harbours and in a simulated dredging situation.

Authors:  J Svavarsson; A Granmo; R Ekelund; J Szpunar
Journal:  Mar Pollut Bull       Date:  2001-05       Impact factor: 5.553

3.  Tetrodotoxin: Occurrence in atelopid frogs of Costa Rica.

Authors:  Y H Kim; G B Brown; F A Mosher
Journal:  Science       Date:  1975-07-11       Impact factor: 47.728

4.  Genetic basis of tetrodotoxin resistance in pufferfishes.

Authors:  Byrappa Venkatesh; Song Qing Lu; Nidhi Dandona; Shean Long See; Sydney Brenner; Tuck Wah Soong
Journal:  Curr Biol       Date:  2005-11-22       Impact factor: 10.834

5.  Evolutionary history of a complex adaptation: tetrodotoxin resistance in salamanders.

Authors:  Charles T Hanifin; William F Gilly
Journal:  Evolution       Date:  2014-12-16       Impact factor: 3.694

6.  Occurrence of a tetrodotoxin-like compound in the eggs of the venomous blue-ringed octopus (Hapalochlaena maculosa).

Authors:  D D Sheumack; M E Howden; I Spence
Journal:  Toxicon       Date:  1984       Impact factor: 3.033

7.  Identification of novel genes related to tetrodotoxin intoxication in pufferfish.

Authors:  Jeen Hee Lee; Hidehiro Kondo; Shigeru Sato; Seiji Akimoto; Toshio Saito; Masaaki Kodama; Shugo Watabe
Journal:  Toxicon       Date:  2007-02-01       Impact factor: 3.033

8.  Erratum to: A survey of best practices for RNA-seq data analysis.

Authors:  Ana Conesa; Pedro Madrigal; Sonia Tarazona; David Gomez-Cabrero; Alejandra Cervera; Andrew McPherson; Michal Wojciech Szcześniak; Daniel J Gaffney; Laura L Elo; Xuegong Zhang; Ali Mortazavi
Journal:  Genome Biol       Date:  2016-08-26       Impact factor: 13.583

9.  Monophyly, distance and character-based multigene barcoding reveal extraordinary cryptic diversity in Nassarius: a complex and dangerous community.

Authors:  Shanmei Zou; Qi Li; Lingfeng Kong
Journal:  PLoS One       Date:  2012-10-11       Impact factor: 3.240

10.  Full-length transcriptome assembly from RNA-Seq data without a reference genome.

Authors:  Manfred G Grabherr; Brian J Haas; Moran Yassour; Joshua Z Levin; Dawn A Thompson; Ido Amit; Xian Adiconis; Lin Fan; Raktima Raychowdhury; Qiandong Zeng; Zehua Chen; Evan Mauceli; Nir Hacohen; Andreas Gnirke; Nicholas Rhind; Federica di Palma; Bruce W Birren; Chad Nusbaum; Kerstin Lindblad-Toh; Nir Friedman; Aviv Regev
Journal:  Nat Biotechnol       Date:  2011-05-15       Impact factor: 54.908

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  3 in total

1.  Multi-Omics Analysis of Gene and Protein Candidates Possibly Related to Tetrodotoxin Accumulation in the Skin of Takifugu flavidus.

Authors:  Huimin Feng; Kun Qiao; Chunchun Wang; Bei Chen; Min Xu; Hua Hao; Zhen Huang; Zhiyu Liu; Qin Wang
Journal:  Mar Drugs       Date:  2021-11-15       Impact factor: 5.118

Review 2.  Marine Neurotoxins' Effects on Environmental and Human Health: An OMICS Overview.

Authors:  Sophie Guillotin; Nicolas Delcourt
Journal:  Mar Drugs       Date:  2021-12-23       Impact factor: 5.118

3.  Tetrodotoxins Secretion and Voltage-Gated Sodium Channel Adaptation in the Ribbon Worm Kulikovia alborostrata (Takakura, 1898) (Nemertea).

Authors:  Anna E Vlasenko; Vasiliy G Kuznetsov; Grigorii V Malykin; Alexandra O Pereverzeva; Peter V Velansky; Konstantin V Yakovlev; Timur Yu Magarlamov
Journal:  Toxins (Basel)       Date:  2021-08-29       Impact factor: 4.546

  3 in total

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