| Literature DB >> 33274073 |
Michelle H Busch1, Katie H Costigan2, Ken M Fritz3, Thibault Datry4, Corey A Krabbenhoft5, John C Hammond6, Margaret Zimmer7, Julian D Olden8, Ryan M Burrows9,10, Walter K Dodds11, Kate S Boersma12, Margaret Shanafield13, Stephanie K Kampf14, Meryl C Mims15, Michael T Bogan16, Adam S Ward17, Mariana Perez Rocha18, Sarah Godsey19, George H Allen20, Joanna R Blaszczak21, C Nathan Jones22, Daniel C Allen1.
Abstract
Rivers that cease to flow are globally prevalent. Although many epithets have been used for these rivers, a consensus on terminology has not yet been reached. Doing so would facilitate a marked increase in interdisciplinary interest as well as critical need for clear regulations. Here we reviewed literature from Web of Science database searches of 12 epithets to learn (Objective 1-O1) if epithet topics are consistent across Web of Science categories using latent Dirichlet allocation topic modeling. We also analyzed publication rates and topics over time to (O2) assess changes in epithet use. We compiled literature definitions to (O3) identify how epithets have been delineated and, lastly, suggest universal terms and definitions. We found a lack of consensus in epithet use between and among various fields. We also found that epithet usage has changed over time, as research focus has shifted from description to modeling. We conclude that multiple epithets are redundant. We offer specific definitions for three epithets (non-perennial, intermittent, and ephemeral) to guide consensus on epithet use. Limiting the number of epithets used in non-perennial river research can facilitate more effective communication among research fields and provide clear guidelines for writing regulatory documents.Entities:
Keywords: ephemeral; intermittent; latent Dirichlet allocation; literature review; non-perennial; river; stream; synthesis; temporary; text mining
Year: 2020 PMID: 33274073 PMCID: PMC7707420
Source DB: PubMed Journal: Water (Basel) ISSN: 2073-4441 Impact factor: 3.103
Table of search results from Web of Science. Epithets used to define non-perennial systems in the present study, paired with the source it was pulled from in brackets. We limited our search results by WoS categories to narrow our results for papers specifically related to natural river systems.
| Epithet and [Reference] | Number of Papers |
|---|---|
| Arid [ | 837 |
| Discontinuous [ | 223 |
| Dry [ | 1580 |
| Ephemeral [ | 1652 |
| Episodic [ | 201 |
| Intermittent [ | 1582 |
| Interrupted [ | 103 |
| Irregular [ | 347 |
| Non-Perennial [ | 59 |
| Non-Permanent [ | 40 |
| Seasonal [ | 4358 |
| Temporary [ | 1404 |
| Total | 11,696 |
Figure 1.Proportion of epithets by Web of Science (WoS) category. Displayed are the 40 categories (out of 148 unique WoS categories) that contained at least 50 papers across all 12 epithet corpora on the y-axis. The proportion of each category made up of epithets is on the x-axis. Each color represents a different epithet, with the most dominate epithet per category highlighted in black. The total number of papers appearing in each category is displayed as the sample size along each column for reference (environmental sciences had the largest number with 2398 while multidisciplinary chemistry had the smallest with 55 papers).
Complete Corpus Topics.
| Topic Number | Topic Name | Top 20 Topic Words (Stemmed) |
|---|---|---|
| t_1 | Geomorphology | sediment *, channel *, flow *, water *, river *, deposit *, stream *, groundwat *, concentr *, surfac *, flood *, studi *, area *, season *, lake *, event *, basin *, transport *, process *, discharg * |
| t_2 | Vegetation | speci *, season *, flower *, plant *, burn *, tree *, fire *, popul *, forest *, habitat *, area *, site *, differ *, year *, studi *, veget *, seed *, growth *, us *, dry * |
| t_3 | Ecohydrology | stream *, flow *, river *, speci *, water *, dry *, commun *, fish *, intermitt *, site *, habitat *, season *, chang *, differ *, variabl *, studi *, increas *, us *, hydrolog *, temporari * |
| t_4 | Agriculture | soil *, water *, irrig *, yield *, us *, season *, crop *, increas *, eros *, treatment *, gulli *, plant *, differ *, year *, effect *, studi *, field *, ha *, product *, mm * |
| t_5 | Climate | water *, temperatur *, dry *, season *, rate *, increas *, us *, concentr *, degre *, differ *, leaf *, result *, effect *, flow *, plant *, activ *, cell *, growth *, studi *, co * |
| t_6 | Hydrology | water *, model *, us *, season *, chang *, flow *, data *, river *, streamflow *, climat *, studi *, runoff *, basin *, hydrolog *, result *, forecast *, simul *, watersh *, method *, area * |
Figure 2.A non-metric multidimensional scaling (nMDS) ordination (stress = 0.1029) representing similarities among the six topics found from latent Dirichlet allocation (LDA) topic modeling (blue words) and how they relate to papers about each epithet (black words). The large sample size made plotting each paper too cluttered, so average probabilities of the topic appearing in papers across all twelve corpora were used to understand broad, topical terms between epithets.
Content of papers by epithet (NP refers to non-perennial). We examined 672 papers to mine definitions. However, many of these papers were not about non-perennial systems or lacked definitions. “Non-perennial” had the lowest number of papers included in the analysis, the largest percentage of papers that were about non-perennial systems, and one of the smallest proportions of papers without definitions (only “episodic” was lower).
| Epithet | Number of Papers | % About NP Systems | % of NP Papers Without Definitions | NP Papers Without Definitions | Final Definition Counts |
|---|---|---|---|---|---|
| Arid | 72 | 83.3% | 36.7% | 22 | 36 |
| Discontinuous | 36 | 33.3% | 66.7% | 8 | 4 |
| Dry | 75 | 66.7% | 52.0% | 26 | 24 |
| Ephemeral | 75 | 98.7% | 32.4% | 24 | 65 |
| Episodic | 63 | 19.1% | 16.7% | 2 | 13 |
| Intermittent | 75 | 88.0% | 33.3% | 22 | 59 |
| Interrupted | 33 | 33.3% | 54.6% | 6 | 5 |
| Irregular | 36 | 11.1% | 75.0% | 3 | 1 |
| Non-perennial | 28 | 100.0% | 17.9% | 5 | 23 |
| Non-permanent | 29 | 79.3% | 52.2% | 12 | 11 |
| Seasonal | 75 | 60.0% | 51.1% | 23 | 23 |
| Temporary | 75 | 89.3% | 31.3% | 21 | 51 |
| Total | 672 | 38.5% | 174 | 315 |
Figure 3.Number of total papers published (A) and proportion of papers published under different epithets (B) over time frames. Note the large jump in publication rates after 1990, and the steady increase until 2016. Papers from all 12 epithets are published between 1996 and 2000, though “non-perennial” does not appear in 2001–2005, all 12 are again represented in results from 2006 onward.
Figure 4.Publications of each epithet over time. Abstracts from 1990 to 2017 were compiled to see how epithet use has changed over time. Each epithet was counted once per abstract. Broader terms such as “seasonal,” “dry,” and “temporary” have been used the most frequently. “Temporary,” “non-perennial,” and “intermittent” are the three terms with the largest rate of increase over time.
Time Series Corpus Topics.
| Topic Number | Topic Name | Top 20 Topic Words (Stemmed) |
|---|---|---|
| t_1 | Community ecology | stream *, water *, river *, flow *, season *, fish *, commun *, site *, dry *, speci *, intermitt *, sampl *, habitat *, concentr, * lake *, assemblag, studi *, differ *, pool *, variabl * |
| t_2 | Hydrology | water *, model *, season *, chang *, river *, flow *, us *, climat *, streamflow *, basin *, forecast *, hydrolog *, increas, precipit *, manag *, region *, temperatur *, variabl *, runoff *, data * |
| t_3 | Water quality | flow *, water *, model *, us *, temperatur *, surfac *, dry *, result *, particl *, condit *, solut *, observ *, differ *, studi *, heat *, measur *, time *, process *, effect *, wave * |
| t_4 | Soil science | soil *, water *, season *, increas *, dry *, emiss *, content *, rate *, us *, moistur *, concentr *, drainag *, root *, potenti *, cm *, measur *, co *, rice *, carbon *, soil water * |
| t_5 | Agriculture | water *, irrig *, yield *, crop *, us *, season *, plant *, treatment *, increas *, stress *, product *, water us *, flower *, growth *, soil *, differ *, leaf *, grain *, effici *, effect * |
| t_6 | Riparian | speci *, season *, forest *, burn *, fire *, veget *, tree *, plant *, site *, area *, habitat *, dry *, riparian *, us *, year *, increas *, effect *, water *, differ *, commun * |
| t_7 | Geomorphology | sediment *, channel *, deposit *, river *, gulli *, flow *, flood *, basin *, eros *, ephemer *, area *, format *, chang *, system *, lake *, bed *, sand *, surfac *, vallei *, studi * |
| t_8 | Modeling | water *, model *, us *, runoff *, groundwat *, soil *, area *, flow *, watersh *, data *, catchment *, studi *, sediment *, eros *, rainfal *, estim *, qualiti *, stream *, land *, result * |
| t_9 | Population ecology | speci *, popul *, flower *, fish *, temperatur *, differ *, habitat *, genet *, studi *, season *, femal *, egg *, rate *, us *, new *, male *, size *, growth *, degre *, reproduct * |
Summary definitions for arid, ephemeral, intermittent, non-perennial, and temporary by broad research fields. Each one of these five epithets had over 80% of their papers provide a definition.
| Epithet | Field | Summary Definition |
|---|---|---|
| Arid | Ecology | Natural drying and wetting phases following seasonal fluctuations, leads to natural expansion (connected stream) and contractions (isolated pools) |
| Arid | Hydrology | May not flow every year depending on precipitation, minimal groundwater recharge |
| Arid | Eco-Hydrology | Variable flows between or within years, sensitive to changes in climate |
| Ephemeral | Ecology | Streams that only flow variably for a short period of time, after precipitation events during certain times of the year |
| Ephemeral | Hydrology | Flow is scarce and sporadic in streams with high drainage, flow typically as a result of an extreme precipitation event |
| Ephemeral | Eco-Hydrology | Rivers without flow for most of the year, yet which have high intensity flooding periods in response to precipitation events |
| Intermittent | Ecology | Seasonal flowing and drying conditions that may result in isolated pools |
| Intermittent | Hydrology | Regular wet and dry cycles with extreme floods and droughts, resulting in disconnected pools during the dry season |
| Intermittent | Eco-Hydrology | Naturally dynamic and variable cycles of wetting and drying that can change from year to year in response to precipitation patterns |
| Non-Perennial | Ecology | Lose surface water in drying and rewetting cycles for a period of time in most years |
| Non-Perennial | Hydrology | Variable low and no flow periods |
| Non-Perennial | Eco-Hydrology | Loss of flow and connectivity, reducing a stream to isolated pools during dry season |
| Temporary | Ecology | Rivers that cease to flow for a period of time during cycle of drying and rewetting |
| Temporary | Hydrology | Recurrent dry phase with no flow for variable time periods |
| Temporary | Eco-Hydrology | Rivers that experience wetting after precipitation events and drying in drier seasons leading to isolated pools |
Figure 5.An nMDS representing the Euclidean distance among epithets and definition themes (stress = 0.0962). Epithets in blue text, definition themes in larger, black text. The section of the nMDS with overlap includes epithets “intermittent”, “temporary”, and “non-perennial” as well as the theme Phases of Drying: No Flow. Full theme list: predictability = predictability/seasonality; variability = variability/unpredictability; time frame = specific time frame mentioned; landform/climate = related to specific landform/climate; extremes = related to extremes (droughts and floods); pod = phases of drying: (Table S2).