| Literature DB >> 33273558 |
Katarzyna Kosik1, Dawid Szpecht2, Salwan R Al-Saad3, Lukasz M Karbowski3, Grażyna Kurzawińska4, Marta Szymankiewicz1, Krzysztof Drews4, Hubert Wolski4, Agnieszka Seremak-Mrozikiewicz4.
Abstract
The vitamin D receptor (VDR), coded by the VDR gene, plays a pivotal role in executing cellular functions when bound by the active form of vitamin D. Gene polymorphisms in this receptor have been increasingly associated with a heightened state of vulnerability to certain diseases. However, limited data is available concerning the role of VDR gene polymorphisms in preterm infant complications. In 114 premature infants (< 32 weeks gestation) we analyze four single nucleotide VDR polymorphisms (rs2228570 (FokI), rs1544410 (BsmI), rs797532 (ApaI), rs731236 (TaqI)) for their association with respiratory distress syndrome (RDS), intraventricular hemorrhage (IVH), bronchopulmonary dysplasia (BPD), necrotizing enterocolitis (NEC) and retinopathy of prematurity (ROP). The results show that BPD was almost four times more likely in infants with the genotype CC of ApaI (rs7975232) (OR 3.845; p = 0.038). While both BPD and NEC were 2.1 times more likely to occur in preterm infants with the allele C of ApaI (rs7975232) (respectively: OR 2.111 and OR 2.129, p < 0.05). The ApaI VDR polymorphism appears to influence incidence of BPD and NEC in preterm infants. Considering VDR polymorphisms in future genetic investigations, in preterm complications, may prove clinically relevant.Entities:
Year: 2020 PMID: 33273558 PMCID: PMC7713052 DOI: 10.1038/s41598-020-78125-4
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Primer sequences, location of the primer pairs, and fragment sizes of the vitamin D receptor gene polymorphisms.
| VDR polymorphism | Location | Primers | Enzyme | Product |
|---|---|---|---|---|
| rs2228570 | Exon 2 (chr12:47879112) | 5′-AGCTGGCCCTGGCACTGACTCTGCTCT-3’ 5′-ATGGAAACACCTTGCTTCTTCTCCCTC-3’ | FokI | C (F): 267 bpT (f): 197 bp, 70 bp |
| rs1544410 | Intron 8 (chr12:47846052) | 5′-CAACCAAGACTACAAGTACCGCGTCAGTGA-3’ 5′-AACCAGCGGGAAGAGGTCAAGGG-3’ | BsmI | G (b): 646 bp, 175 bp A (B): 821 bp |
| rs7975232 | Intron 8 (chr12:47845054) | 5′-CAGAGCATGGACAGGGAGCAA-3' 5′-GCAACTCCTCATGGCTGAGGTCTC-3’ | ApaI | A (A): 745 bp C (a): 528 bp, 217 bp |
| rs731236 | Exon 9 (chr12:47844974) | TaqI | T (T): 494 bp, 251 bp C (t): 293 bp, 251 bp, 201 bp |
VDR polymorphisms: FokI (rs2228570); TaqI (rs731236); ApaI (rs7975232); BsmI (rs1544410); chr12—chromosome 12; Allels: C, T, G, A.
Demographic and clinical characteristics of enrolled infants.
| Complications | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RDS | IVH (II–IV) | BPD | NEC | ROP | |||||||||||
| Yes | No | p value | Yes | No | p value | Yes | No | p value | Yes | No | p value | Yes | No | p value | |
| Male | 63 | 4 | 0.7597a | 26 | 41 | 0.0251e | 23 | 44 | 0.8393e | 16 | 51 | 0.8402e | 27 | 40 | 0.8098e |
| Female | 44 | 3 | 9 | 38 | 17 | 30 | 12 | 35 | 20 | 27 | |||||
| < 29 | 65 | 2 | 0.0953a | 31 | 36 | < 0.00001a | 34 | 33 | 0.0001a | 21 | 46 | 0.0446e | 37 | 30 | 0.0003e |
| ≥ 29 | 42 | 5 | 4 | 43 | 6 | 41 | 7 | 40 | 10 | 37 | |||||
| < 750 | 19 | 1 | 0.1129b | 11 | 9 | 0.0001e | 13 | 7 | < 0.00001e | 6 | 14 | 0.1134e | 14 | 6 | 0.0033e |
| 750–1000 | 34 | 0 | 16 | 18 | 18 | 16 | 12 | 22 | 16 | 18 | |||||
| > 1000 | 54 | 6 | 8 | 52 | 9 | 51 | 10 | 50 | 17 | 43 | |||||
| 1st minute | 5 (1–10) | 6 (1–10) | 0.5796c | 4 (1–7) | 6 (1–10) | 0.0001c | 4 (1–7) | 6 (1–10) | 0.0048c | 5 (1–9) | 6 (1–10) | 0.4195c | 4 (1–6) | 6 (1–10) | 0.028c |
| 5th minute | 7 (1–10) | 7 (5–10) | 0.9321c | 7 (1–10) | 7 (2–10) | 0.001c | 7 (1–10) | 7 (4–10) | 0.0029c | 7 (5–10) | 7 (1–10) | 0.8434c | 7 (4–9) | 7 (1–10) | 0.0951c |
| Vaginal | 46 | 5 | 0.283a | 19 | 32 | 0.1723e | 20 | 31 | 0.406e | 16 | 35 | 0.1285e | 22 | 29 | 0.7095e |
| Cesarean section | 61 | 2 | 16 | 47 | 20 | 43 | 12 | 51 | 25 | 38 | |||||
| 7.32 (6.91–7.53) | 7.29 (7.07–7.51) | 0.5693c | 7.29 (6.98–7.51) | 7.33 (6.91–7.53) | 0.2098c | 7.34 (6.91–7.51) | 7.31 (7.02–7.53) | 0.5668c | 7.37 (7.16–7.53) | 7.31 (6.91–7.51) | 0.0304c | 7.31 (6.91–7.4) | 7.32 (7–7.53) | 0.31c | |
| − 2.6 (− 21.9 to 10.6) | − 3.5 (− 9.4 to − 0.4) | 0.2768c | − 2.9 (− 16.9 to 0.8) | − 2.8 (− 21.9 to 10.6) | 0.4007c | − 2.35 (− 21.9 to 2.3) | − 3 (− 14.7 to 10.6) | 0.5118c | − 2.02 (− 9.9 to 2.8) | − 3 (− 21.9 to 10.6) | 0.1274c | − 3.03 (− 21.9 to 0.7) | − 2.85 (− 14.7 to 10.6) | 0.2174c | |
| Yes | 65 | 5 | 0.8716a | 30 | 40 | 0.0008a | 29 | 41 | 0.0736e | 21 | 49 | 0.0889e | 32 | 38 | 0.2197e |
| No | 42 | 2 | 5 | 39 | 11 | 33 | 7 | 37 | 15 | 29 | |||||
| 98 | 6 | 0.4837d | 31 | 73 | 0.7577a | 38 | 66 | 0.484a | 26 | 78 | 0.9731a | 44 | 60 | 0.6753a | |
| 9 | 1 | 4 | 6 | 2 | 8 | 2 | 8 | 3 | 7 | ||||||
| Yes | 12 | 1 | 0.7143a | 9 | 4 | 0.004a | 0 | 13 | 0.0038d | 6 | 7 | 0.1143a | 0 | 13 | 0.0007d |
| No | 95 | 6 | 26 | 75 | 40 | 61 | 22 | 79 | 47 | 54 | |||||
Dell Statistica(data analysis software system), version 10. software.dell.com.
BPD bronchopulmonary dysplasia, IVH intraventricular hemorrhage, NEC necrotizing enterocolitis, RDS respiratory distress syndrome, ROP retinopathy of prematurity.
aChi-square test with Yate's correction.
bFisher Freeman Halton test.
cMann Whitney test; dFisher's exact test; e Chi-square test.
Genotype and allele distribution of infants with or without RDS, BPD, IVH, NEC or ROP.
| Polymorphism | Complications | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| RDS | IVH (II–IV) | NEC | BPD | ROP | ||||||||||||||||
| Yes | No | p value | OR | Yes | No | p value | OR | Yes | No | p value | OR | Yes | No | p value | OR | Yes | No | p value | OR | |
| Genotype | ||||||||||||||||||||
| CC | 33 | 3 | References | 10 | 26 | References | 6 | 30 | References | 12 | 24 | References | 15 | 21 | References | |||||
| CT | 20 | 2 | 1 | 0.909 (0.095—11.78) | 18 | 38 | 0.838 | 1.232 (0.451—3.489) | 16 | 40 | 0.290 | 2 (0.640—6.963) | 18 | 38 | 1 | 0.947 (0.357—2.57) | 22 | 34 | 0.989 | 0.906 (0.356—2.328) |
| TT | 54 | 2 | 0.596 | 2.455 (0.264—30.51) | 7 | 15 | 0.967 | 1.213 (0.318—4.43) | 6 | 16 | 0.521 | 1.875 (0.42—8.242) | 10 | 12 | 0.518 | 1.667 (0.487—5.65) | 10 | 12 | 0.99 | 1.167 (0.349—3.861) |
| Allele | ||||||||||||||||||||
| C | 86 | 8 | References | 38 | 90 | References | 28 | 100 | References | 42 | 86 | References | 52 | 76 | References | |||||
| T | 128 | 6 | 0.333 | 1.984 (0.579—7.179) | 32 | 68 | 0.816 | 1.115 (0.607—2.038) | 28 | 72 | 0.362 | 1.389 (0.724—2.66) | 38 | 62 | 0.499 | 1.255 (0.699—2.248) | 42 | 58 | 0.941 | 1.058 (0.601—1.862) |
| Genotype | ||||||||||||||||||||
| CC | 8 | 0 | References | 2 | 6 | References | 1 | 7 | References | 3 | 5 | References | 4 | 4 | References | |||||
| TC | 57 | 5 | 1 | 0 (0—9.266) | 17 | 45 | 1 | 1.133 (0.179—12.52) | 12 | 50 | 1.000 | 1.68 (0.184—81.94) | 16 | 46 | 0.747 | 0.579 (0.1—4.19) | 22 | 40 | 0.667 | 0.55 (0.093—3.289) |
| TT | 42 | 2 | 1 | 0 (0—30.55) | 16 | 28 | 0.853 | 1.714 (0.262—19.14) | 15 | 29 | 0.435 | 3.621 (0.394—173.9) | 21 | 23 | 0.889 | 1.522 (0.257—10.93) | 21 | 23 | 1 | 0.913 (0.149—5.583) |
| Allele | ||||||||||||||||||||
| C | 73 | 5 | References | 21 | 57 | References | 14 | 64 | References | 22 | 56 | References | 30 | 48 | References | |||||
| T | 141 | 9 | 1 | 1.073 (0.272—3.72) | 49 | 101 | 0.461 | 1.317 (0.693—2.551) | 42 | 108 | 0.127 | 1.778 (0.868—3.801) | 58 | 92 | 0.153 | 1.605 (0.857—3.06) | 64 | 86 | 0.64 | 1.191 (0.657—2.173) |
| Genotype | ||||||||||||||||||||
| AA | 21 | 2 | References | 6 | 17 | References | 3 | 20 | References | 6 | 17 | References | 9 | 14 | References | |||||
| AC | 53 | 5 | 1 | 1.01 (0.089—6.778) | 16 | 42 | 1 | 1.079 (0.327 - | 12 | 46 | 0.649 | 1.739 (0.403—10.57) | 15 | 43 | 1 | 0.988 (0.297—3.644) | 20 | 38 | 0.883 | 0.819 (0.273—2.552) |
| CC | 33 | 0 | 0.329 | - | 13 | 20 | 0.457 | 1.842 (0.507—7.195) | 13 | 20 | 0.059 | 4.333 (0.954—26.65) | 19 | 14 | 0.038 | 3.845 (1.065—14.82) | 18 | 15 | 0.388 | 1.867 (0.558—6.363) |
| Allele | ||||||||||||||||||||
| A | 95 | 9 | References | 28 | 76 | References | 18 | 86 | References | 27 | 77 | References | 38 | 66 | References | |||||
| C | 119 | 5 | 42 | 82 | 0.323 | 1.39 (0.757—2.572) | 38 | 86 | 0.028 | 2.111 (1.075—4.242) | 53 | 71 | 0.012 | 2.129 (1.169—3.912) | 56 | 68 | 0.237 | 1.43 (0.812—2.528) | ||
| Genotype | ||||||||||||||||||||
| AA | 18 | 1 | References | 5 | 14 | References | 3 | 16 | References | 6 | 13 | References | 9 | 10 | References | |||||
| GA | 48 | 4 | 1 | 0.667 (0.013—7.393) | 14 | 38 | 1 | 1.032 (0.279—4.346) | 10 | 42 | 1.000 | 1.27 (0.275—8.069) | 13 | 39 | 0.786 | 0.722 (0.202—2.819) | 17 | 35 | 0.389 | 0.539 (0.163—1.824) |
| GG | 41 | 2 | 1 | 1.139 (0.018—23.16) | 16 | 27 | 0.593 | 1.659 (0.447—6.97) | 15 | 28 | 0.217 | 2.857 (0.648 - | 21 | 22 | 0.325 | 2.068 (0.588—7.851) | 21 | 22 | 1 | 1.061 (0.314—3.609) |
| Allele | ||||||||||||||||||||
| A | 84 | 6 | References | 24 | 66 | References | 16 | 74 | References | 25 | 65 | References | 35 | 55 | References | |||||
| G | 130 | 8 | 0.997 | 1.161 (0.319—3.967) | 46 | 92 | 0.358 | 1.375 (0.738—2.596) | 40 | 98 | 0.075 | 1.888 (0.945—3.893) | 55 | 83 | 0.083 | 1.723 (0.938—3.205) | 59 | 79 | 0.659 | 1.174 (0.66—2.096) |
Results are expressed as absolute number of patients (percentage). The odds ratio (OR) and 95% confidence intervals (95% CI). CC denotes homozygosity for the C-encoded VDR FokI (rs2228570) polymorphism variant; TT homozygosity for the T-encoded VDR FokI (rs2228570) T polymorphism variant; CT heterozygosity for VDR FokI (rs2228570) polymorphism. CC denotes homozygosity for the C-encoded VDR TaqI (rs731236) polymorphism variant; TT homozygosity for the T-encoded VDR TaqI (rs731236) T polymorphism variant; CT heterozygosity for VDR TaqI (rs731236) polymorphism. AA denotes homozygosity for the A-encoded VDR ApaI (rs7975232) polymorphism variant; CC homozygosity for the C-encoded VDR ApaI (rs7975232) T polymorphism variant; AC heterozygosity for VDR ApaI (rs7975232) polymorphism. AA denotes homozygosity for the A-encoded VDR BsmI (rs1544410) polymorphism variant; GG homozygosity for the G-encoded VDR BsmI (rs1544410) T polymorphism variant; AG heterozygosity for VDR BsmI (rs1544410).
Cytel Studio version 11.1.0 (January 05, 2016).
VDR vvitamin D receptor, BPD bronchopulmonary dysplasia, IVH intraventricular hemorrhage, NEC necrotizing enterocolitis, RDS respiratory distress syndrome, ROP retinopathy of prematurity.