Literature DB >> 33270898

GPCRdb in 2021: integrating GPCR sequence, structure and function.

Albert J Kooistra1, Stefan Mordalski1, Gáspár Pándy-Szekeres1,2, Mauricio Esguerra1, Alibek Mamyrbekov1, Christian Munk1, György M Keserű2, David E Gloriam1.   

Abstract

G protein-coupled receptors (GPCRs) form both the largest family of membrane proteins and drug targets, mediating the action of one-third of medicines. The GPCR database, GPCRdb serves >4 000 researchers every month and offers reference data, analysis of own or literature data, experiment design and dissemination of published datasets. Here, we describe new and updated GPCRdb resources with a particular focus on integration of sequence, structure and function. GPCRdb contains all human non-olfactory GPCRs (and >27 000 orthologs), G-proteins and arrestins. It includes over 2 000 drug and in-trial agents and nearly 200 000 ligands with activity and availability data. GPCRdb annotates all published GPCR structures (updated monthly), which are also offered in a refined version (with re-modeled missing/distorted regions and reverted mutations) and provides structure models of all human non-olfactory receptors in inactive, intermediate and active states. Mutagenesis data in the GPCRdb spans natural genetic variants, GPCR-G protein interfaces, ligand sites and thermostabilising mutations. A new sequence signature tool for identification of functional residue determinants has been added and two data driven tools to design ligand site mutations and constructs for structure determination have been updated extending their coverage of receptors and modifications. The GPCRdb is available at https://gpcrdb.org.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33270898     DOI: 10.1093/nar/gkaa1080

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  69 in total

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Journal:  Nat Struct Mol Biol       Date:  2022-03-03       Impact factor: 15.369

4.  GPCRsignal: webserver for analysis of the interface between G-protein-coupled receptors and their effector proteins by dynamics and mutations.

Authors:  Przemysław Miszta; Paweł Pasznik; Szymon Niewieczerzał; Jakub Jakowiecki; Sławomir Filipek
Journal:  Nucleic Acids Res       Date:  2021-07-02       Impact factor: 16.971

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Journal:  Nature       Date:  2021-03-24       Impact factor: 49.962

6.  Current Trends in GPCR Allostery.

Authors:  Khuraijam Dhanachandra Singh; Sadashiva S Karnik
Journal:  J Membr Biol       Date:  2021-01-20       Impact factor: 1.843

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Authors:  Jakub Jakowiecki; Renata Abel; Urszula Orzeł; Paweł Pasznik; Robert Preissner; Sławomir Filipek
Journal:  Molecules       Date:  2021-04-23       Impact factor: 4.411

8.  PyPLIF HIPPOS-Assisted Prediction of Molecular Determinants of Ligand Binding to Receptors.

Authors:  Enade P Istyastono; Nunung Yuniarti; Vivitri D Prasasty; Sudi Mungkasi
Journal:  Molecules       Date:  2021-04-22       Impact factor: 4.411

9.  Variation in the Evolution and Sequences of Proglucagon and the Receptors for Proglucagon-Derived Peptides in Mammals.

Authors:  David M Irwin
Journal:  Front Endocrinol (Lausanne)       Date:  2021-07-12       Impact factor: 5.555

10.  Bitter Taste and Olfactory Receptors: Beyond Chemical Sensing in the Tongue and the Nose.

Authors:  Mercedes Alfonso-Prieto
Journal:  J Membr Biol       Date:  2021-06-25       Impact factor: 1.843

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