| Literature DB >> 33266441 |
Karolina M Stepien1, Elżbieta Ciara2, Aleksandra Jezela-Stanek3.
Abstract
Fucosidosis is a neurodegenerative disorder which progresses inexorably. Clinical features include coarse facial features, growth retardation, recurrent upper respiratory infections, dysostosis multiplex, and angiokeratoma corporis diffusum. Fucosidosis is caused by mutations in the FUCA1 gene resulting in α-L-fucosidase deficiency. Only 36 pathogenic variants in the FUCA1 gene are related to fucosidosis. Most of them are missense/nonsense substitutions; six missense and 11 nonsense mutations. Among deletions there were eight small and five gross changes. So far, only three splice site variants have been described-one small deletion, one complete deletion and one stop-loss mutation. The disease has a significant clinical variability, the cause of which is not well understood. The genotype-phenotype correlation has not been well defined. This review describes the genetic profile and clinical manifestations of fucosidosis in pediatric and adult cases.Entities:
Keywords: FUCA1; clinical outcome; fucosidosis; genotype; lysosomal storage disease; neurocognitive dysfunction
Year: 2020 PMID: 33266441 PMCID: PMC7700486 DOI: 10.3390/genes11111383
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
FUCA1 pathogenic variants causing fucosidosis phenotype reported to date.
| Nucleotide Change 2 | Amino Acid Change | Variant Type | Protein Domain | MAF | HGMD Accession | Zygosity Status | Genotype Set 1 | Effect | References | PMID |
|---|---|---|---|---|---|---|---|---|---|---|
| c.203C > T | p.Ser68Leu | Missense | GHS | No data | CM940789 | hmz | G1 | The substitution exhibits a shift in polarity from polar to non-polar and displays an increase in Kyte–Doolittle hydrophobicity from −0.8 to 3.8. The variant occurs 399 amino acids from the end of the protein. | [ | 7874128 |
| c.244C > T | p.Gln82* | Nonsense | GHS | <0.0001 | CM930255 | hmz; | G2 | This nonsense substitution truncates the protein at codon 82, which is 385 amino acids from the end of the protein. | [ | 8401503 |
| c.355_364del10 | p.(Glu119Thrfs*11) | Small del/fs | GHS | No data | CD972215 | hmz | G4 | This deletion results in a reading frame shift which truncates the protein at codon 130, which is 337 amino acids from the end of the protein. | [ | 9039984 |
| c.393T > A | p.Tyr131* | Nonsense | GHS | <0.0001 | CM022209 | hmz | G5 | This nonsense substitution truncates the protein at codon 131, which is 336 amino acids from the end of the protein. | [ | 12408193 |
| c.437delC | p.(Pro146Argfs*41) | Small del/fs | GHS | No data | CD931119 | hmz | G6 | This deletion results in a reading frame shift which truncates the protein at codon 187, which is 280 amino acids from the end of the protein. | [ | 8401503 |
| c.459G > A | p.Trp153* | Nonsense | GHS | No data | CM994353 | htz comp | G7.1 | This nonsense substitution truncates the protein at codon 153, which is 314 amino acids from the end of the protein. | [ | 10496076 |
| c.464C > T | p.Ser155Phe | Missense | GHS | No data | CM144672 | htz comp | G8.1 | The substitution exhibits a shift in polarity from polar to non-polar and displays an increase in Kyte–Doolittle hydrophobicity from −0.8 to 2.8. The variant occurs 312 amino acids from the end of the protein. | [ | 24767253 |
| c.467_468delAA | p.(Lys156Argfs*11) | Small del/fs | GHS | No data | CD931120 | htz comp | G9.1 | This deletion results in a reading frame shift which truncates the protein at codon 167, which is 300 amino acids from the end of the protein. | [ | 8504303 |
| c.525-76_663-163del3282 | p.? | Gross del | na | No data | CG1613053 | htz comp | G10.1 | This variant alters the acceptor splice site of exon 3 and the consequence of this change is not predictable, but a skip of exon 3 is very likely. | [ | 27706744 |
| c.564G > A | p.Trp188* | Nonsense | GHS | No data | CM970537 | hmz | G11 | This nonsense substitution truncates the protein at codon 188, which is 279 amino acids from the end of the protein. | [ | 9039984 |
| c.648C > A | p.Tyr216* | Nonsense | GHS | No data | CM930256 | hmz | G12 | This nonsense substitution truncates the protein at codon 216, which is 251 amino acids from the end of the protein. | [ | 8401503 |
| c.661delA | p.(Ser221Alafs*6) | Small del/fs | GHS | <0.0001 | CD930985 | hmz | G13 | This deletion results in a reading frame shift which truncates the protein at codon 227, which is 240 amino acids from the end of the protein. | [ | 8401503 |
| c.671delC | p.(Pro224Leufs*3) | Small del/fs | GHS | No data | CD1613052 | htz comp | G10.2 | This deletion results in a reading frame shift which truncates the protein at codon 227, which is 240 amino acids from the end of the protein. | [ | 27706744 |
| c.717C > A | p.Tyr239* | Nonsense | GHS | No data | CM1916910 | hmz | G15 | This nonsense substitution truncates the protein at codon 239, which is 228 amino acids from the end of the protein. | [ | 31603145 |
| c.768+1G > A | p.? | Splice site | GHS | No data | CS1711597 | hmz | G16 | This substitution affects the invariant GT donor splice site of intron 4. | [ | 28097321 |
| c.773delA | p.(Glu258Glyfs*3) | Small del/fs | GHS | No data | CD941679 | hmz | G17 | This deletion results in a reading frame shift which truncates the protein at codon 261, which is 206 amino acids from the end of the protein. | [ | 8081399 |
| c.790C > T | p.Arg264* | Nonsense | GHS | <0.0001 | CM144673 | htz comp | G8.2 | This nonsense substitution truncates the protein at codon 264, which is 203 amino acids from the end of the protein. | [ | 24767253 |
| c.810delC | p.(Cys271Valfs*59) | Small del/fs | GHS | No data | CD93098 | hmz | G18 | This deletion results in a reading frame shift which truncates the protein at codon 330, which is 137 amino acids from the end of the protein. | [ | 8401503 |
| c.837_838delTG | p.(Cys279*) | Small del | GHS | No data | CD184374 | hmz | G19 | This deletion results in a premature stop gain which truncates the protein at codon 279, which is 188 amino acids from the end of the protein. | [ | 29588375 |
| c.969+1G > A | p.? | Splice site | GHS | No data | CS930812 | hmz | G20 | This substitution affects the invariant GT donor splice site of intron 5. | [ | 8097260 |
| c.1000A > T | p.Asn334Tyr | Missense | GHS | <0.0001 | CM970538 | hmz | G21 | The substitution does not exhibit a shift in polarity and displays an increase in Kyte–Doolittle hydrophobicity from −3.5 to −1.3. The variant occurs 133 amino acids from the end of the protein. | [ | 9039984 |
| c.1003dupT | p.(Tyr335Leufs*9) | Small ins/fs | GHS | No data | CI972609 | hmz | G22 | This insertion results in a reading frame shift which truncates the protein at codon 344, which is 123 amino acids from the end of the protein. | [ | 9039984 |
| c.1030_1095dup | p.(Asp344_Asn365dup) | Gross ins | GHS | No data | CN962970 | hmz | G23 | This in-frame variation leads to the duplication of 66bps (22 residues) in exon 6 and the consequence of this change is not predictable, but a loss of protein function is very likely. | [ | 8829645 |
| c.1034G > A | p.Gly345Glu | Missense | GHS | No data | CM085971 | htz | G24.1 | The substitution exhibits a shift in polarity from non-polar to negatively charged and displays a decrease in Kyte–Doolittle hydrophobicity from −0.4 to −3.5. The variant occurs 122 amino acids from the end of the protein. | [ | 18504684 |
| c.1060delA | p.(Arg354Glyfs*9) | Small del/fs | GHS | No data | CD19006 | hmz | G25 | This insertion results in a reading frame shift which truncates the protein at codon 363, which is 104 amino acids from the end of the protein. | [ | 30315573 |
| c.1138G > T | p.Glu380* | Nonsense | FCT | <0.0001 | CM920276 | hmz | G26 | This nonsense substitution truncates the protein at codon 380, which is 87 amino acids from the end of the protein. | [ | 1281988 |
| c.1160G > A | p.Trp387* | Nonsense | GHS | <0.0001 | CM930257 | hmz; | G27 | This nonsense substitution truncates the protein at codon 387, which is 80 amino acids from the end of the protein. | [ | 8401503 |
| c.1216G > T | p.Gly406* | Nonsense | FCT | <0.0001 | CM950482 | hmz | G28 | This nonsense substitution truncates the protein at codon 406, which is 61 amino acids from the end of the protein. | [ | 7581404 |
| c.1229T > G | p.Leu410Arg | Missense | FCT | No data | CM983928 | hmz | G29 | The substitution exhibits a shift in polarity from non-polar to positively charged and displays a decrease in Kyte–Doolittle hydrophobicity from 3.8 to −4.5. The variant occurs 57 amino acids from the end of the protein. | [ | 9762612 |
| c.1261-1G > A | p.? | Splice site | FCT | No data | CS1913889 | hmz | G30 | This substitution affects the invariant AG acceptor splice site of intron 7. | [ | 31064022 |
| c.1279C > T | p.Gln427* | Nonsense | FCT | <0.0001 | CM890049 | hmz; | G31 | This nonsense substitution truncates the protein at codon 427, which is 40 amino acids from the end of the protein. | [ | 2642067 |
| c.1399T > A | p.(*467Lysext*79) | Stop-loss | na | No data | CM085972 | htz | G24.2 | The substitution causes an extension of the protein after codon 466. | [ | 18504684 |
| c.194G > A | p.Gly65Asp | Missense | GHS | No data | CM930254 | hmz | G32 | The substitution exhibits a shift in polarity from non-polar to negatively charged and displays a decrease in Kyte–Doolittle hydrophobicity from −0.4 to −3.5. The variant occurs 402 amino acids from the end of the protein. | [ | 8504303 |
| Exon 4 del | na | Gross del | GHS | No data | CG994924 | hmz | G33 | Loss of protein or enzymatic function. | [ | 10094192 |
| Exon 7-8 del | na | Gross del | na | No data | CG910663 | hmz | G34 | Loss of protein or enzymatic function. | [ | 2012122 |
| Entire gene del | na | Gross del | na | No data | CG994923 | htz comp | G7.2 | Loss of protein or enzymatic function. | [ | 10496076 |
1 genotype corresponds in Table 2 phenotype description, 2 nomenclature according HGVS v2.0 recommendations: RefSeq: NM_000147.4, NP_000138.2. FCT—α-L-fucosidase, C-terminal; GHS, glycoside hydrolase superfamily domain; HGMD, human gene mutation database; hmz, homozygote; htz comp, compound heterozygote; MAF, minor allele frequency according ExAc, 1000G, gnomAD databases; na, not applicable; null, no protein product or lack it’s activity; PMID, PubMed unique identifier; pts, patients; del, deletion; fs, frame shift.
Clinical characteristics of patients with fucosidosis, reported with novel pathogenic variants in the FUCA1 gene.
| Genotype Set 1 | Ethnic Origin (pts) | Gender/No of Cases | Family History | Phenotype | Ref. | ||||
|---|---|---|---|---|---|---|---|---|---|
| Developmental History | Additional Clinical and Enzymatic Findings | Disease Type | |||||||
| G1 | c.203C > T, | hom | Italian (1) | NA | [ | ||||
| G2 | c.244C > T, | hmz | Italian (1) | [ | |||||
| Turkish (1) | 4-year-old: male | Consanguineous parents (first degree cousins) | Delayed development—started to sit unassisted after one year, began to walk at age of 27 months, could not speak any meaningful words. | X-ray: mild form of dysostosis multiplex. | Not classified | [ | |||
| G3 | c.244C > T, p.Gln82*/c.1279C > T, p.Gln427* | htz comp | N/A (2) | N/A | [ | ||||
| G4 | c.355_364del10, | hmz | Austrian (1) | [ | |||||
| G5 | c.393T > A, | hmz | Chinese (1) | Male | Consanguineous parents (first-degree | Mild hypertrophic cardiomyopathy, mild aortic stenosis. | Recurrent bronchopneumonia and partial lung collapse (with chronic inflammatory process in high-resolution computerized tomography of the thorax). | Intermediate | [ |
| Taiwanese (1) | Female | Non-consanguineous parents | α-fucosidase activity markedly decreased in peripheral blood leukocytes (2.4 nmol/h per mg protein; control 24–162), while that of cultured skin fibroblasts even lower (0.24 nmol/h per mg protein; control 96–360); α-fucosidase activity conspicuously decreased in peripheral blood leukocytes (0.5 nmol/h/mg protein; normal range 50–200 nmol/h/mg protein). | Late infantile-onset with slow progressive symptoms, considered to be type I | [ | ||||
| G6 | c.437delC, | hmz | Italian (8) | NA | [ | ||||
| G7 | c.459G > A, p.Trp153*/ | htz comp | Japanese (1) | Female | Non-consan-guineous parents | At 23 months: | α-L-fucosidase | Chronic, slow progressive | [ |
| G8 | c.464C > T, p.Ser155Phe/c.790C > T, p.Arg264* | htz comp | Spanish or Portuguese (1) | NA | [ | ||||
| G9 | c.467_468delAA, | htz comp | Italian (1) | NA | All patients had negligible enzyme activity and reduced CRIM. | Not classified | [ | ||
| G10 | c.525-76_663-163del3282, p.?/c.671delC, p.(Pro224Leufs*3) | htz comp | Thai (1) | Male | Non-consanguineous parents | Until 2 years of age: | Brain MRI: increasing degrees of cerebral atrophy with significant signal changes in the thalamus. | Not classified | [ |
| G11 | c.564G > A, | hmz | Austrian (1) | NA | [ | ||||
| G12 | c.648C > A, | hmz | Belgian (1) | [ | |||||
| G13 | c.661delA, | hmz | British (1) | [ | |||||
| G14 | c.661delA, | htz comp | Canadian-Indian (1) | [ | |||||
| G15 | c.717C > A, | hmz | Chinese (1) | 4-year-old male | Consanguineous marriage family | Short stature, seizure, psychomotor delay, mild scoliosis facial dysmorphism (frontal bossing, epicanthus, low nasalbridge, long philtrum, and thick lips), increased alkaline phosphatase; died at the age of 6 years. | Almost no expression of | Atypical fucosidosis type I | [ |
| G16 | c.768+1G > A, p.? | hmz | Syrian (1) | NA | Leukodystrophy | Not classified | [ | ||
| G17 | c.773delA, | hmz | Turkish (1) | Male | Consanguineous (second or third cousin) parents; | Diagnosed at the age of 1 year, because of | Very low CRIM for α-L-fucosidase (1.5% of normal mean) and negligible enzyme activity measured with 4-methylumbelliferyl α-L-fucoside as a substrate in cultured skin fibroblasts | Not classified | [ |
| G18 | c.810delC, | hmz | Portuguese (1) | NA | [ | ||||
| G19 | c.837_838delTG, p.Cys279* | hmz | Iranian (1) | 4-year-old girl (and her uncle, aged 23 years) | Consanguineous parents (second cousins) | Proband: – | I in proband | [ | |
| G20 | c.969+1G > A, | hmz | East Indian-Zambian (1) | Female | A first cousin of the proband died | From 18 months: | Weight and height below the 3rd centile, head circumference | Not classified | [ |
| G21 | c.1000A > T, | hmz | Austrian (1) | N/A | [ | ||||
| G22 | c.1003dupT, | hmz | Sudanese (1) | No data, only “In some cases, it was possible to attribute this homozygosity to consanguinity or to substantiate it by family studies.” | N/A | All (6) patients had been diagnosed as having fucosidosis by the finding of decreased α-L-fucosidase activity in white blood cells, fibroblasts, or serum to confirm a preliminary clinical diagnosis. | Severe (4) | [ | |
| G23 | c.1030_1095dup, p.(Asp344_Asn365dup) | hmz | N/A (1) | Not presented | N/A | Lymphoid cells lacked α-L-fucosidase activity but contained a reduced amount (<5% of control) of an immunoreactive α-L-fucosidase. | Not classified | [ | |
| G24 | c.1034G > A, p.Gly345Glu/ | htz comp | N/A (1) | Female | Non-consanguineous parents | Very slow psychomotor development with episodes of developmental stagnation or mild regression and recovery, muscular | α-L-fucosidase in plasma: 0.00 mU/mL (reference range: 2.00–9.99), | Not classified | [ |
| G25 | c.1060delA, p.(Arg354Glyfs*9) | hmz | no data (1) | NA | [ | ||||
| G26 | c.1138G > T, | hmz | Hispanic-American (8) | [ | |||||
| G27 | c.1160G > A, | hmz | no data (1) | [ | |||||
| G28 | c.1216G > T, | hmz | German (2) | Males | Consanguineous parents (third cousin) parents in both patients | Patient AB—diagnosed with fucosidosis at the age of 2.1 years. | α-L-fucosidase activities in the leukocytes negligible. | Not classified | [ |
| G29 | c.1229T > G, | hmz | No data (1) | Female | Consanguineous parents | (Described initially at the age of 20 years by Primrose et al. in 1975 [ | Not classified | [ | |
| G30 | c.1261-1G > A, p.? | hmz | No data (1) | 8-year-old boy | Consanguineous parents | From the age of 2 years— | Low activity of α-fucosidase in leukocytes (0.18 nmol/h/mg protein; ref. range: 19–266.6 nmol/h/mg protein) | Not classified | [ |
| G31 | c.1279C > T, p.Gln427* | hmz | Italian (2) | N/A | N/A | [ | |||
| G32 | c.194G > A, | hom | French-American (3pts) | N/A | [ | ||||
| G33 | exon 4 deletion | hom | Dutch (2) | Male | [ | ||||
| G34 | exon 7-8 del | hmz | Algerian (2) | N/A | [ | ||||
1 The detailed description of genotype data are in Table 1, 2 The variant in the other allele is not known; N/A, not available, CRIM, cross-reactive immunological material.