| Literature DB >> 33265378 |
Jean-Marc Girault1, Anne Humeau-Heurtier2.
Abstract
Several entropy measures are now widely used to analyze real-world time series. Among them, we can cite approximate entropy, sample entropy and fuzzy entropy (FuzzyEn), the latter one being probably the most efficient among the three. However, FuzzyEn precision depends on the number of samples in the data under study. The longer the signal, the better it is. Nevertheless, long signals are often difficult to obtain in real applications. This is why we herein propose a new FuzzyEn that presents better precision than the standard FuzzyEn. This is performed by increasing the number of samples used in the computation of the entropy measure, without changing the length of the time series. Thus, for the comparisons of the patterns, the mean value is no longer a constraint. Moreover, translated patterns are not the only ones considered: reflected, inversed, and glide-reflected patterns are also taken into account. The new measure (so-called centered and averaged FuzzyEn) is applied to synthetic and biomedical signals. The results show that the centered and averaged FuzzyEn leads to more precise results than the standard FuzzyEn: the relative percentile range is reduced compared to the standard sample entropy and fuzzy entropy measures. The centered and averaged FuzzyEn could now be used in other applications to compare its performances to those of other already-existing entropy measures.Entities:
Keywords: entropy; fetal heart rate; fuzzy entropy; irregularity; sample entropy; symmetrical m-patterns; time series
Year: 2018 PMID: 33265378 PMCID: PMC7512804 DOI: 10.3390/e20040287
Source DB: PubMed Journal: Entropy (Basel) ISSN: 1099-4300 Impact factor: 2.524
Figure 1Membership functions with . Gaussian function (blue) with ; rectangular function (magenta) with , for .
Figure 2Stochastic time series where 2-patterns are pointed out. Each number corresponds to the place of the corresponding segment. No-centered 2-patterns are considered. The two 2-patterns ‘1’ and ‘15’ (black bullets) have the same mean value; they are similar. The total number of similar 2-patterns is 12: (‘1’,‘15’), (‘5’,‘21’), (‘7’,‘19’), (‘8’,‘20’), (‘13’,‘24’), (‘14’,‘25’).
Figure 3Stochastic time series with different types of 2-patterns. (a) Centered 2-patterns are considered. Centered 2-patterns similar to ‘1’ are represented with magenta bullets; there are six patterns similar to ‘1’. The total number of centered similar 2-patterns is 25: (‘1’,‘9’,‘13’,‘15’,‘17’,‘24’), (‘2’,‘14’,‘25’), (‘3’,‘8’,‘20’), (‘4’,‘23’), (‘5’,‘7’,‘10’,‘19’,‘21’), (‘11’,‘18’), (‘12’,‘16’), (‘22’,‘26’). The total number of similar centered 2-patterns is much larger than that of no-centered 2-patterns. (b) Regarding the 2-pattern (‘1’), four kinds of 2-patterns can be obtained: 2-patterns with translation (‘T’) in black (‘1’,‘15’), 2-patterns with vertical reflection (‘R’) in red (‘7’, ’19’), 2-patterns with inversion (‘I’) in green (‘13’,‘24’), 2-patterns with glide reflection (‘G’) in blue (‘5’,‘21’). By considering all 2-patterns ranging from ‘1’–‘27’, the mean total number of symmetrical 2-patterns is with , , , . (c) Regarding the 2-pattern (‘1’), two kinds of centered 2-patterns can be obtained: 2-patterns (‘T’,‘I’) in black (‘1’,‘9’,‘13’,‘15’,‘17’,‘24’), 2-patterns (‘R’,‘G’) in blue (‘5’,‘7’,‘10’,‘19’,‘21’). By considering all 2-patterns ranging from ‘1’–‘27’, the mean total number of symmetrical 2-patterns is with , , and .
For the calculation of and , the median of the mean number of similar 3-patterns and the median of the mean number of centered and averaged of similar 3-patterns obtained from noises ( samples) with ranging from to 2. , where is the median of the number of centered symmetric similar 3-patterns obtained in the calculation of , . For the computation, and standard deviation of the time series.
| −1 | −0.8 | −0.6 | −0.4 | −0.2 | 0 | 0.2 | 0.4 | 0.6 | 0.8 | 1.0 | 1.2 | 1.4 | 1.6 | 1.8 | 2.0 | |
| 0.73 | 0.69 | 0.65 | 0.62 | 0.6 | 0.63 | 0.63 | 0.67 | 0.80 | 1.07 | 1.76 | 3.64 | 9.24 | 26.47 | 71.68 | 162.38 | |
| 16.71 | 17.03 | 17.48 | 18.13 | 19.18 | 20.75 | 23.19 | 27.35 | 35.71 | 53.15 | 93.73 | 206.09 | 540.00 | 1580.67 | 4317.40 | 9277.86 |
Results obtained for time series, for samples and for different values.
| −1 | −0.8 | −0.6 | −0.4 | −0.2 | 0 | 0.2 | 0.4 | 0.6 | 0.8 | 1 | 1.2 | 1.4 | 1.6 | 1.8 | 2 | |
| 3.46 | 3.5 | 3.53 | 3.54 | 3.57 | 3.59 | 3.58 | 3.54 | 3.45 | 3.29 | 3.04 | 2.68 | 2.21 | 1.68 | 1.13 | 0.64 | |
| 3.17 | 3.21 | 3.25 | 3.26 | 3.28 | 3.28 | 3.28 | 3.25 | 3.16 | 3.00 | 2.76 | 2.40 | 1.93 | 1.42 | 0.93 | 0.54 | |
| 3.58 | 3.58 | 3.58 | 3.58 | 3.56 | 3.53 | 3.49 | 3.42 | 3.30 | 3.11 | 2.84 | 2.46 | 1.99 | 1.46 | 0.94 | 0.51 | |
| 3.14 | 3.17 | 3.2 | 3.22 | 3.24 | 3.24 | 3.23 | 3.20 | 3.12 | 2.97 | 2.73 | 2.37 | 1.90 | 1.40 | 0.93 | 0.57 | |
| 3.57 | 3.58 | 3.58 | 3.57 | 3.56 | 3.53 | 3.48 | 3.41 | 3.30 | 3.11 | 2.83 | 2.44 | 1.96 | 1.44 | 0.94 | 0.53 | |
| 0.05 | 0.08 | 0.07 | 0.08 | 0.09 | 0.08 | 0.08 | 0.10 | 0.08 | 0.05 | 0.08 | 0.11 | 0.16 | 0.24 | 0.25 | 0.23 | |
| 0.03 | 0.04 | 0.03 | 0.04 | 0.04 | 0.04 | 0.04 | 0.05 | 0.04 | 0.04 | 0.08 | 0.11 | 0.17 | 0.22 | 0.22 | 0.18 | |
| 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.02 | 0.01 | 0.02 | 0.03 | 0.07 | 0.11 | 0.18 | 0.23 | 0.23 | 0.20 | |
| 0.02 | 0.03 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.03 | 0.02 | 0.04 | 0.08 | 0.11 | 0.13 | 0.13 | 0.10 | |
| 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.02 | 0.05 | 0.08 | 0.11 | 0.14 | 0.14 | 0.11 | |
| 0.63 | 0.75 | 1.24 | 1.09 | 1.17 | 1.04 | 1.10 | 0.99 | 0.90 | 0.43 | 0.12 | 0.00 | -0.05 | 0.10 | 0.16 | 0.29 | |
| 3.08 | 5.77 | 5.6 | 7.06 | 6.11 | 3.80 | 4.27 | 5.85 | 3.17 | 0.68 | 0.21 | -0.05 | -0.12 | 0.08 | 0.09 | 0.14 | |
| 1.95 | 2.09 | 3.26 | 3.34 | 4.38 | 2.53 | 2.78 | 2.72 | 2.03 | 1.33 | 0.89 | 0.40 | 0.50 | 0.89 | 1.03 | 1.39 | |
| 5.47 | 8.67 | 9.1 | 9.69 | 11.3 | 12.20 | 8.96 | 8.57 | 5.55 | 1.59 | 0.77 | 0.36 | 0.43 | 0.74 | 0.86 | 1.07 | |
| 1.49 | 2.86 | 1.95 | 2.87 | 2.27 | 1.35 | 1.51 | 2.44 | 1.19 | 0.18 | 0.08 | 0.05 | 0.07 | 0.02 | 0.07 | 0.12 | |
| 0.8 | 0.76 | 0.91 | 1.08 | 1.48 | 0.73 | 0.80 | 0.87 | 0.59 | 0.63 | 0.69 | 0.40 | 0.58 | 0.72 | 0.75 | 0.86 | |
| 2.96 | 4.51 | 3.52 | 4.13 | 4.66 | 5.46 | 3.74 | 3.81 | 2.44 | 0.81 | 0.59 | 0.36 | 0.51 | 0.59 | 0.60 | 0.61 |
Same as Table A1, but for .
| −1 | −0.8 | −0.6 | −0.4 | −0.2 | 0 | 0.2 | 0.4 | 0.6 | 0.8 | 1 | 1.2 | 1.4 | 1.6 | 1.8 | 2 | |
| 3.47 | 3.51 | 3.48 | 3.54 | 3.56 | 3.57 | 3.54 | 3.58 | 3.43 | 3.27 | 3.01 | 2.65 | 2.18 | 1.66 | 1.13 | 0.64 | |
| 3.02 | 3.1 | 3.12 | 3.15 | 3.2 | 3.18 | 3.16 | 3.15 | 3.04 | 2.88 | 2.61 | 2.26 | 1.80 | 1.30 | 0.84 | 0.49 | |
| 3.28 | 3.27 | 3.28 | 3.29 | 3.27 | 3.26 | 3.22 | 3.16 | 3.05 | 2.87 | 2.59 | 2.22 | 1.77 | 1.26 | 0.80 | 0.44 | |
| 2.99 | 3.02 | 3.04 | 3.07 | 3.11 | 3.10 | 3.10 | 3.05 | 2.97 | 2.82 | 2.58 | 2.22 | 1.77 | 1.29 | 0.84 | 0.51 | |
| 3.21 | 3.22 | 3.23 | 3.24 | 3.23 | 3.22 | 3.18 | 3.12 | 3.02 | 2.85 | 2.59 | 2.21 | 1.74 | 1.25 | 0.80 | 0.47 | |
| 0.51 | 0.49 | 0.43 | 0.5 | 0.66 | 0.58 | 0.59 | 0.39 | 0.40 | 0.35 | 0.19 | 0.18 | 0.18 | 0.21 | 0.25 | 0.23 | |
| 0.17 | 0.16 | 0.13 | 0.17 | 0.23 | 0.17 | 0.18 | 0.14 | 0.17 | 0.11 | 0.09 | 0.11 | 0.17 | 0.19 | 0.20 | 0.16 | |
| 0.05 | 0.04 | 0.03 | 0.03 | 0.05 | 0.03 | 0.04 | 0.04 | 0.03 | 0.05 | 0.08 | 0.11 | 0.17 | 0.20 | 0.20 | 0.16 | |
| 0.09 | 0.07 | 0.08 | 0.07 | 0.06 | 0.07 | 0.08 | 0.07 | 0.06 | 0.06 | 0.05 | 0.07 | 0.10 | 0.13 | 0.12 | 0.09 | |
| 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.02 | 0.03 | 0.08 | 0.11 | 0.13 | 0.12 | 0.09 | |
| 1.95 | 2.13 | 2.46 | 1.86 | 1.94 | 2.48 | 2.23 | 1.78 | 1.38 | 2.21 | 1.15 | 0.54 | 0.08 | 0.08 | 0.25 | 0.42 | |
| 10.08 | 11.6 | 11.8 | 14.54 | 12.6 | 16.19 | 14.51 | 8.33 | 11.03 | 5.97 | 1.49 | 0.58 | 0.05 | 0.03 | 0.25 | 0.41 | |
| 4.68 | 5.55 | 4.51 | 5.74 | 9.74 | 7.20 | 6.06 | 4.93 | 6.25 | 4.90 | 3.12 | 1.60 | 0.74 | 0.64 | 1.17 | 1.62 | |
| 26.88 | 22.74 | 17.41 | 28.43 | 33.81 | 30.33 | 30.39 | 21.08 | 23.78 | 16.41 | 4.91 | 1.34 | 0.59 | 0.57 | 1.09 | 1.55 | |
| 2.75 | 3.03 | 2.7 | 4.43 | 3.63 | 3.93 | 3.80 | 2.36 | 4.05 | 1.17 | 0.16 | 0.03 | 0.03 | 0.05 | 0.00 | 0.00 | |
| 0.92 | 1.1 | 0.59 | 1.36 | 2.65 | 1.35 | 1.18 | 1.13 | 2.05 | 0.84 | 0.91 | 0.69 | 0.61 | 0.52 | 0.74 | 0.85 | |
| 8.44 | 6.59 | 4.32 | 9.28 | 10.84 | 8.00 | 8.71 | 6.94 | 9.41 | 4.42 | 1.74 | 0.52 | 0.47 | 0.45 | 0.68 | 0.79 |
Same as Table A1, but for . “-” means that an undefined value is obtained due the absence of similar m-patterns in the time series.
| −1 | −0.8 | −0.6 | −0.4 | −0.2 | 0 | 0.2 | 0.4 | 0.6 | 0.8 | 1 | 1.2 | 1.4 | 1.6 | 1.8 | 2 | |
| - | - | - | - | - | - | - | - | - | - | 2.95 | 2.71 | 2.19 | 1.59 | 1.13 | 0.64 | |
| 3.09 | 3.02 | 2.95 | 3.08 | 3.01 | 3.26 | 3.17 | 3.13 | 2.99 | 2.75 | 2.50 | 2.13 | 1.70 | 1.17 | 0.78 | 0.45 | |
| 3.15 | 3.15 | 3.14 | 3.15 | 3.19 | 3.14 | 3.13 | 3.08 | 2.95 | 2.79 | 2.51 | 2.11 | 1.70 | 1.16 | 0.76 | 0.43 | |
| 2.73 | 2.73 | 2.84 | 2.77 | 2.81 | 2.92 | 2.84 | 2.87 | 2.72 | 2.55 | 2.35 | 2.05 | 1.65 | 1.19 | 0.78 | 0.47 | |
| 3.08 | 3.11 | 3.12 | 3.11 | 3.11 | 3.12 | 3.09 | 3.04 | 2.93 | 2.76 | 2.51 | 2.14 | 1.67 | 1.19 | 0.76 | 0.44 | |
| - | - | - | - | - | - | - | - | - | - | 1.09 | 0.49 | 0.26 | 0.28 | 0.26 | 0.22 | |
| 0.61 | 0.39 | 0.71 | 0.59 | 0.58 | 0.80 | 0.63 | 0.58 | 0.29 | 0.40 | 0.22 | 0.18 | 0.16 | 0.21 | 0.19 | 0.15 | |
| 0.21 | 0.16 | 0.16 | 0.15 | 0.12 | 0.14 | 0.12 | 0.11 | 0.08 | 0.06 | 0.09 | 0.14 | 0.16 | 0.23 | 0.19 | 0.15 | |
| 0.27 | 0.19 | 0.29 | 0.28 | 0.29 | 0.27 | 0.29 | 0.26 | 0.24 | 0.19 | 0.09 | 0.10 | 0.10 | 0.10 | 0.11 | 0.08 | |
| 0.09 | 0.1 | 0.1 | 0.08 | 0.07 | 0.07 | 0.05 | 0.06 | 0.04 | 0.03 | 0.03 | 0.06 | 0.11 | 0.10 | 0.12 | 0.09 | |
| - | - | - | - | - | - | - | - | - | - | 4.03 | 1.75 | 0.64 | 0.31 | 0.38 | 0.49 | |
| - | - | - | - | - | - | - | - | - | - | 11.29 | 2.60 | 0.59 | 0.22 | 0.40 | 0.44 | |
| - | - | - | - | - | - | - | - | - | - | 11.06 | 4.13 | 1.54 | 1.93 | 1.44 | 1.70 | |
| - | - | - | - | - | - | - | - | - | - | 34.58 | 6.91 | 1.33 | 1.92 | 1.27 | 1.54 | |
| 1.89 | 1.37 | 3.38 | 2.97 | 3.94 | 4.77 | 4.26 | 4.10 | 2.76 | 6.28 | 1.44 | 0.31 | 0.03 | 0.07 | 0.01 | 0.03 | |
| 1.28 | 1.03 | 1.49 | 1.13 | 1 | 2.02 | 1.16 | 1.26 | 0.23 | 1.07 | 1.40 | 0.86 | 0.55 | 1.24 | 0.77 | 0.82 | |
| 5.5 | 2.79 | 6.16 | 6.22 | 6.89 | 10.12 | 11.25 | 8.05 | 6.25 | 12.67 | 6.07 | 1.87 | 0.42 | 1.23 | 0.64 | 0.71 |
Figure 4Relative percentile ranges derived from Table A1, Table A2 and Table A3 reported in the Appendix. (a) For , relative percentile range values obtained for different m-values: for the centered fuzzy entropy compared to the fuzzy entropy (), for the averaged fuzzy entropy compared to the fuzzy entropy () and for the centered and averaged fuzzy entropy compared to the fuzzy entropy (); (b–d) similar to (a), but for , and , respectively.
Figure 5Centered and averaged fuzzy entropy () and standard fuzzy entropy () for normal (N) in blue and pathological fetuses (P) in green with . The results for three data lengths are shown. means statistically significant between the two groups.