Literature DB >> 33264409

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back.

Prakash Kharel1, Gertraud Becker1, Vladimir Tsvetkov2,3,4, Pavel Ivanov1,5.   

Abstract

Guanine-quadruplexes (G4s) are non-canonical four-stranded structures that can be formed in guanine (G) rich nucleic acid sequences. A great number of G-rich sequences capable of forming G4 structures have been described based on in vitro analysis, and evidence supporting their formation in live cells continues to accumulate. While formation of DNA G4s (dG4s) within chromatin in vivo has been supported by different chemical, imaging and genomic approaches, formation of RNA G4s (rG4s) in vivo remains a matter of discussion. Recent data support the dynamic nature of G4 formation in the transcriptome. Such dynamic fluctuation of rG4 folding-unfolding underpins the biological significance of these structures in the regulation of RNA metabolism. Moreover, rG4-mediated functions may ultimately be connected to mechanisms underlying disease pathologies and, potentially, provide novel options for therapeutics. In this framework, we will review the landscape of rG4s within the transcriptome, focus on their potential impact on biological processes, and consider an emerging connection of these functions in human health and disease.
© The Author(s) 2020. Published by Oxford University Press on behalf of Nucleic Acids Research.

Entities:  

Year:  2020        PMID: 33264409     DOI: 10.1093/nar/gkaa1126

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  Recognition of G-quadruplex RNA by a crucial RNA methyltransferase component, METTL14.

Authors:  Atsuhiro Yoshida; Takanori Oyoshi; Akiyo Suda; Shiroh Futaki; Miki Imanishi
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

Review 2.  Action and function of helicases on RNA G-quadruplexes.

Authors:  Marco Caterino; Katrin Paeschke
Journal:  Methods       Date:  2021-09-10       Impact factor: 4.647

Review 3.  G4-quadruplex-binding proteins: review and insights into selectivity.

Authors:  Vanessa Meier-Stephenson
Journal:  Biophys Rev       Date:  2022-04-20

4.  Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning.

Authors:  Alex X Lu; Amy X Lu; Iva Pritišanac; Taraneh Zarin; Julie D Forman-Kay; Alan M Moses
Journal:  PLoS Comput Biol       Date:  2022-06-29       Impact factor: 4.779

Review 5.  New perspectives in cancer drug development: computational advances with an eye to design.

Authors:  Matteo Castelli; Stefano A Serapian; Filippo Marchetti; Alice Triveri; Valentina Pirota; Luca Torielli; Simona Collina; Filippo Doria; Mauro Freccero; Giorgio Colombo
Journal:  RSC Med Chem       Date:  2021-07-07

6.  Biological relevance and therapeutic potential of G-quadruplex structures in the human noncoding transcriptome.

Authors:  Martina Tassinari; Sara N Richter; Paolo Gandellini
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

7.  Identification and Structural Aspects of G-Quadruplex-Forming Sequences from the Influenza A Virus Genome.

Authors:  Maria Tomaszewska; Marta Szabat; Karolina Zielińska; Ryszard Kierzek
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

8.  High Flexibility of RNaseH2 Catalytic Activity with Respect to Non-Canonical DNA Structures.

Authors:  Maria Dede; Silvia Napolitano; Anna Melati; Valentina Pirota; Giovanni Maga; Emmanuele Crespan
Journal:  Int J Mol Sci       Date:  2021-05-14       Impact factor: 5.923

9.  Circular L-RNA aptamer promotes target recognition and controls gene activity.

Authors:  Danyang Ji; Kaixin Lyu; Haizhou Zhao; Chun Kit Kwok
Journal:  Nucleic Acids Res       Date:  2021-07-21       Impact factor: 16.971

10.  Differential responses of neurons, astrocytes, and microglia to G-quadruplex stabilization.

Authors:  Natalie Tabor; Conelius Ngwa; Jeremie Mitteaux; Matthew D Meyer; Jose F Moruno-Manchon; Liang Zhu; Fudong Liu; David Monchaud; Louise D McCullough; Andrey S Tsvetkov
Journal:  Aging (Albany NY)       Date:  2021-06-19       Impact factor: 5.682

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