Literature DB >> 33263115

A physics-informed geometric learning model for pathological tau spread in Alzheimer's disease.

Tzu-An Song1,2, Samadrita Roy Chowdhury1,2, Fan Yang1,2, Heidi I L Jacobs2, Jorge Sepulcre2, Van J Wedeen2, Keith A Johnson2, Joyita Dutta1,2.   

Abstract

Tau tangles are a pathophysiological hallmark of Alzheimer's disease (AD) and exhibit a stereotypical pattern of spatiotemporal spread which has strong links to disease progression and cognitive decline. Preclinical evidence suggests that tau spread depends on neuronal connectivity rather than physical proximity between different brain regions. Here, we present a novel physics-informed geometric learning model for predicting tau buildup and spread that learns patterns directly from longitudinal tau imaging data while receiving guidance from governing physical principles. Implemented as a graph neural network with physics-based regularization in latent space, the model enables effective training with smaller data sizes. For training and validation of the model, we used longitudinal tau measures from positron emission tomography (PET) and structural connectivity graphs from diffusion tensor imaging (DTI) from the Harvard Aging Brain Study. The model led to higher peak signal-to-noise ratio and lower mean squared error levels than both an unregularized graph neural network and a differential equation solver. The method was validated using both two-timepoint and three-timepoint tau PET measures. The effectiveness of the approach was further confirmed by a cross-validation study.

Entities:  

Keywords:  Alzheimer’s disease; DTI; PET; graph neural networks; tau spread

Year:  2020        PMID: 33263115      PMCID: PMC7700821          DOI: 10.1007/978-3-030-59728-3_41

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  17 in total

Review 1.  Prion-like mechanisms in neurodegenerative diseases.

Authors:  Bess Frost; Marc I Diamond
Journal:  Nat Rev Neurosci       Date:  2009-12-23       Impact factor: 34.870

2.  Harvard Aging Brain Study: Dataset and accessibility.

Authors:  Alexander Dagley; Molly LaPoint; Willem Huijbers; Trey Hedden; Donald G McLaren; Jasmeer P Chatwal; Kathryn V Papp; Rebecca E Amariglio; Deborah Blacker; Dorene M Rentz; Keith A Johnson; Reisa A Sperling; Aaron P Schultz
Journal:  Neuroimage       Date:  2015-04-03       Impact factor: 6.556

Review 3.  Alzheimer's disease: a re-examination of the amyloid hypothesis.

Authors:  R L Neve; N K Robakis
Journal:  Trends Neurosci       Date:  1998-01       Impact factor: 13.837

4.  A network diffusion model of disease progression in dementia.

Authors:  Ashish Raj; Amy Kuceyeski; Michael Weiner
Journal:  Neuron       Date:  2012-03-21       Impact factor: 17.173

5.  Localizing Sources of Brain Disease Progression with Network Diffusion Model.

Authors:  Chenhui Hu; Xue Hua; Jun Ying; Paul M Thompson; Georges E Fakhri; Quanzheng Li
Journal:  IEEE J Sel Top Signal Process       Date:  2016-08-19       Impact factor: 6.856

6.  Boltzmann generators: Sampling equilibrium states of many-body systems with deep learning.

Authors:  Frank Noé; Simon Olsson; Jonas Köhler; Hao Wu
Journal:  Science       Date:  2019-09-06       Impact factor: 47.728

7.  Neurofibrillary tangles but not senile plaques parallel duration and severity of Alzheimer's disease.

Authors:  P V Arriagada; J H Growdon; E T Hedley-Whyte; B T Hyman
Journal:  Neurology       Date:  1992-03       Impact factor: 9.910

Review 8.  Alzheimer disease: a tale of two prions.

Authors:  Justin M Nussbaum; Matthew E Seward; George S Bloom
Journal:  Prion       Date:  2012-09-10       Impact factor: 3.931

9.  Longitudinal tau PET in ageing and Alzheimer's disease.

Authors:  Clifford R Jack; Heather J Wiste; Christopher G Schwarz; Val J Lowe; Matthew L Senjem; Prashanthi Vemuri; Stephen D Weigand; Terry M Therneau; Dave S Knopman; Jeffrey L Gunter; David T Jones; Jonathan Graff-Radford; Kejal Kantarci; Rosebud O Roberts; Michelle M Mielke; Mary M Machulda; Ronald C Petersen
Journal:  Brain       Date:  2018-05-01       Impact factor: 13.501

10.  Spread of pathological tau proteins through communicating neurons in human Alzheimer's disease.

Authors:  Alan C Evans; Oskar Hansson; Jacob W Vogel; Yasser Iturria-Medina; Olof T Strandberg; Ruben Smith; Elizabeth Levitis
Journal:  Nat Commun       Date:  2020-05-26       Impact factor: 14.919

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  1 in total

Review 1.  Graph Models of Pathology Spread in Alzheimer's Disease: An Alternative to Conventional Graph Theoretic Analysis.

Authors:  Ashish Raj
Journal:  Brain Connect       Date:  2021-05-25
  1 in total

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