Literature DB >> 33259986

Regulation of 3D chromatin organization by CTCF.

Jian-Feng Xiang1, Victor G Corces2.   

Abstract

Studies of nuclear architecture using chromosome conformation capture methods have provided a detailed view of how chromatin folds in the 3D nuclear space. New variants of this technology now afford unprecedented resolution and allow the identification of ever smaller folding domains that offer new insights into the mechanisms by which this organization is established and maintained. Here we review recent results in this rapidly evolving field with an emphasis on CTCF function, with the goal of gaining a mechanistic understanding of the principles by which chromatin is folded in the eukaryotic nucleus.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 33259986      PMCID: PMC8084898          DOI: 10.1016/j.gde.2020.10.005

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  79 in total

1.  Micro-C XL: assaying chromosome conformation from the nucleosome to the entire genome.

Authors:  Tsung-Han S Hsieh; Geoffrey Fudenberg; Anton Goloborodko; Oliver J Rando
Journal:  Nat Methods       Date:  2016-10-10       Impact factor: 28.547

2.  Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution.

Authors:  Ho Sung Rhee; B Franklin Pugh
Journal:  Cell       Date:  2011-12-09       Impact factor: 41.582

3.  Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development.

Authors:  Douglas H Phanstiel; Kevin Van Bortle; Damek Spacek; Gaelen T Hess; Muhammad Saad Shamim; Ido Machol; Michael I Love; Erez Lieberman Aiden; Michael C Bassik; Michael P Snyder
Journal:  Mol Cell       Date:  2017-09-07       Impact factor: 17.970

4.  Human cohesin compacts DNA by loop extrusion.

Authors:  Yoori Kim; Zhubing Shi; Hongshan Zhang; Ilya J Finkelstein; Hongtao Yu
Journal:  Science       Date:  2019-11-28       Impact factor: 47.728

5.  Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

Authors:  Elphège P Nora; Anton Goloborodko; Anne-Laure Valton; Johan H Gibcus; Alec Uebersohn; Nezar Abdennur; Job Dekker; Leonid A Mirny; Benoit G Bruneau
Journal:  Cell       Date:  2017-05-18       Impact factor: 41.582

6.  Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders.

Authors:  Liis Uusküla-Reimand; Huayun Hou; Payman Samavarchi-Tehrani; Matteo Vietri Rudan; Minggao Liang; Alejandra Medina-Rivera; Hisham Mohammed; Dominic Schmidt; Petra Schwalie; Edwin J Young; Jüri Reimand; Suzana Hadjur; Anne-Claude Gingras; Michael D Wilson
Journal:  Genome Biol       Date:  2016-08-31       Impact factor: 13.583

7.  Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II, and Pol III.

Authors:  Yongpeng Jiang; Jie Huang; Kehuan Lun; Boyuan Li; Haonan Zheng; Yuanjun Li; Rong Zhou; Wenjia Duan; Chenlu Wang; Yuanqing Feng; Hong Yao; Cheng Li; Xiong Ji
Journal:  Genome Biol       Date:  2020-07-02       Impact factor: 13.583

8.  Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells.

Authors:  Ioanna Pavlaki; France Docquier; Igor Chernukhin; Georgia Kita; Svetlana Gretton; Christopher T Clarkson; Vladimir B Teif; Elena Klenova
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2018-07-05       Impact factor: 4.490

9.  CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53.

Authors:  Ricardo Saldaña-Meyer; Edgar González-Buendía; Georgina Guerrero; Varun Narendra; Roberto Bonasio; Félix Recillas-Targa; Danny Reinberg
Journal:  Genes Dev       Date:  2014-04-01       Impact factor: 11.361

10.  The structural basis for cohesin-CTCF-anchored loops.

Authors:  Yan Li; Judith H I Haarhuis; Ángela Sedeño Cacciatore; Roel Oldenkamp; Marjon S van Ruiten; Laureen Willems; Hans Teunissen; Kyle W Muir; Elzo de Wit; Benjamin D Rowland; Daniel Panne
Journal:  Nature       Date:  2020-01-06       Impact factor: 69.504

View more
  11 in total

1.  A CTCF-Binding Element and Histone Deacetylation Cooperatively Maintain Chromatin Loops, Linking to Long-Range Gene Regulation in Cancer Genomes.

Authors:  Ran Tang; Yiqun Li; Fang Han; Zhenzhi Li; Xiaoyu Lin; Haoxiu Sun; Xiaoqing Zhang; Qinghua Jiang; Huan Nie; Yu Li
Journal:  Front Oncol       Date:  2022-01-21       Impact factor: 6.244

2.  Key questions on the epigenetics of herpes simplex virus latency.

Authors:  Abigail L Whitford; Anna R Cliffe
Journal:  PLoS Pathog       Date:  2022-06-30       Impact factor: 7.464

Review 3.  The three as: Alternative splicing, alternative polyadenylation and their impact on apoptosis in immune function.

Authors:  Davia Blake; Kristen W Lynch
Journal:  Immunol Rev       Date:  2021-08-08       Impact factor: 12.988

Review 4.  Retrotransposons as Drivers of Mammalian Brain Evolution.

Authors:  Roberto Ferrari; Nicole Grandi; Enzo Tramontano; Giorgio Dieci
Journal:  Life (Basel)       Date:  2021-04-22

5.  Nucleosome-induced homology recognition in chromatin.

Authors:  Jonathan G Hedley; Vladimir B Teif; Alexei A Kornyshev
Journal:  J R Soc Interface       Date:  2021-06-16       Impact factor: 4.293

6.  Three-Dimensional Genome Map of the Filamentous Fungus Penicillium oxalicum.

Authors:  Cheng-Xi Li; Lin Liu; Ting Zhang; Xue-Mei Luo; Jia-Xun Feng; Shuai Zhao
Journal:  Microbiol Spectr       Date:  2022-05-02

7.  Dimerization Activity of a Disordered N-Terminal Domain from Drosophila CLAMP Protein.

Authors:  Evgeniya Tikhonova; Sofia Mariasina; Olga Arkova; Oksana Maksimenko; Pavel Georgiev; Artem Bonchuk
Journal:  Int J Mol Sci       Date:  2022-03-31       Impact factor: 5.923

8.  Transcriptional repression of estrogen receptor alpha by YAP reveals the Hippo pathway as therapeutic target for ER+ breast cancer.

Authors:  Shenghong Ma; Tracy Tang; Gary Probst; Andrei Konradi; Chunyu Jin; Fulong Li; J Silvio Gutkind; Xiang-Dong Fu; Kun-Liang Guan
Journal:  Nat Commun       Date:  2022-02-25       Impact factor: 17.694

Review 9.  3D chromatin architecture and transcription regulation in cancer.

Authors:  Siwei Deng; Yuliang Feng; Siim Pauklin
Journal:  J Hematol Oncol       Date:  2022-05-04       Impact factor: 23.168

10.  CTCF acetylation at lysine 20 is required for the early cardiac mesoderm differentiation of embryonic stem cells.

Authors:  Shixin Gong; Gongcheng Hu; Rong Guo; Jie Zhang; Yiqi Yang; Binrui Ji; Gang Li; Hongjie Yao
Journal:  Cell Regen       Date:  2022-09-19
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.