Literature DB >> 33258390

Natural variation of the cardiac transcriptome in humans.

Tatiana Domitrovic1, Mariana H Moreira2, Rodolfo L Carneiro2, Marcelo Ribeiro-Alves3, Fernando L Palhano2.   

Abstract

We investigated the gene-expression variation among humans by analysing previously published mRNA-seq and ribosome footprint profiling of heart left-ventricles from healthy donors. We ranked the genes according to their coefficient of variation values and found that the top 5% most variable genes had special features compared to the rest of the genome, such as lower mRNA levels and shorter half-lives coupled to increased translation efficiency. We observed that these genes are mostly involved with immune response and have a pleiotropic effect on disease phenotypes, indicating that asymptomatic conditions contribute to the gene expression diversity of healthy individuals.

Entities:  

Keywords:  Gene expression profiling; genetic variation; heart ventricles; human heart; ribosome profiling; translatome

Mesh:

Year:  2020        PMID: 33258390      PMCID: PMC8489943          DOI: 10.1080/15476286.2020.1857508

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  33 in total

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Journal:  Nat Genet       Date:  2007-01-07       Impact factor: 38.330

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Authors:  C J Feltz; G E Miller
Journal:  Stat Med       Date:  1996-03-30       Impact factor: 2.373

3.  The Translational Landscape of the Human Heart.

Authors:  Sebastiaan van Heesch; Franziska Witte; Valentin Schneider-Lunitz; Jana F Schulz; Eleonora Adami; Allison B Faber; Marieluise Kirchner; Henrike Maatz; Susanne Blachut; Clara-Louisa Sandmann; Masatoshi Kanda; Catherine L Worth; Sebastian Schafer; Lorenzo Calviello; Rhys Merriott; Giannino Patone; Oliver Hummel; Emanuel Wyler; Benedikt Obermayer; Michael B Mücke; Eric L Lindberg; Franziska Trnka; Sebastian Memczak; Marcel Schilling; Leanne E Felkin; Paul J R Barton; Nicholas M Quaife; Konstantinos Vanezis; Sebastian Diecke; Masaya Mukai; Nancy Mah; Su-Jun Oh; Andreas Kurtz; Christoph Schramm; Dorothee Schwinge; Marcial Sebode; Magdalena Harakalova; Folkert W Asselbergs; Aryan Vink; Roel A de Weger; Sivakumar Viswanathan; Anissa A Widjaja; Anna Gärtner-Rommel; Hendrik Milting; Cris Dos Remedios; Christoph Knosalla; Philipp Mertins; Markus Landthaler; Martin Vingron; Wolfgang A Linke; Jonathan G Seidman; Christine E Seidman; Nikolaus Rajewsky; Uwe Ohler; Stuart A Cook; Norbert Hubner
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

4.  Relative impact of nucleotide and copy number variation on gene expression phenotypes.

Authors:  Barbara E Stranger; Matthew S Forrest; Mark Dunning; Catherine E Ingle; Claude Beazley; Natalie Thorne; Richard Redon; Christine P Bird; Anna de Grassi; Charles Lee; Chris Tyler-Smith; Nigel Carter; Stephen W Scherer; Simon Tavaré; Panagiotis Deloukas; Matthew E Hurles; Emmanouil T Dermitzakis
Journal:  Science       Date:  2007-02-09       Impact factor: 47.728

5.  Systematic analysis of protein turnover in primary cells.

Authors:  Toby Mathieson; Holger Franken; Jan Kosinski; Nils Kurzawa; Nico Zinn; Gavain Sweetman; Daniel Poeckel; Vikram S Ratnu; Maike Schramm; Isabelle Becher; Michael Steidel; Kyung-Min Noh; Giovanna Bergamini; Martin Beck; Marcus Bantscheff; Mikhail M Savitski
Journal:  Nat Commun       Date:  2018-02-15       Impact factor: 14.919

6.  STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.

Authors:  Damian Szklarczyk; Annika L Gable; David Lyon; Alexander Junge; Stefan Wyder; Jaime Huerta-Cepas; Milan Simonovic; Nadezhda T Doncheva; John H Morris; Peer Bork; Lars J Jensen; Christian von Mering
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  The DisGeNET knowledge platform for disease genomics: 2019 update.

Authors:  Janet Piñero; Juan Manuel Ramírez-Anguita; Josep Saüch-Pitarch; Francesco Ronzano; Emilio Centeno; Ferran Sanz; Laura I Furlong
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

8.  Global variability analysis of mRNA and protein concentrations across and within human tissues.

Authors:  Christine Wegler; Magnus Ölander; Jacek R Wiśniewski; Patrik Lundquist; Katharina Zettl; Anders Åsberg; Jøran Hjelmesæth; Tommy B Andersson; Per Artursson
Journal:  NAR Genom Bioinform       Date:  2019-10-30

9.  Improved Ribosome-Footprint and mRNA Measurements Provide Insights into Dynamics and Regulation of Yeast Translation.

Authors:  David E Weinberg; Premal Shah; Stephen W Eichhorn; Jeffrey A Hussmann; Joshua B Plotkin; David P Bartel
Journal:  Cell Rep       Date:  2016-02-11       Impact factor: 9.423

10.  Genetic effects on gene expression across human tissues.

Authors:  Alexis Battle; Christopher D Brown; Barbara E Engelhardt; Stephen B Montgomery
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

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