Literature DB >> 33256119

'There and Back Again'-Forward Genetics and Reverse Phenotyping in Pulmonary Arterial Hypertension.

Emilia M Swietlik1,2,3, Matina Prapa1,3, Jennifer M Martin1, Divya Pandya1, Kathryn Auckland1, Nicholas W Morrell1,2,3,4, Stefan Gräf1,4,5.   

Abstract

Although the invention of right heart catheterisation in the 1950s enabled accurate clinical diagnosis of pulmonary arterial hypertension (PAH), it was not until 2000 when the landmark discovery of the causative role of bone morphogenetic protein receptor type II (BMPR2) mutations shed new light on the pathogenesis of PAH. Since then several genes have been discovered, which now account for around 25% of cases with the clinical diagnosis of idiopathic PAH. Despite the ongoing efforts, in the majority of patients the cause of the disease remains elusive, a phenomenon often referred to as "missing heritability". In this review, we discuss research approaches to uncover the genetic architecture of PAH starting with forward phenotyping, which in a research setting should focus on stable intermediate phenotypes, forward and reverse genetics, and finally reverse phenotyping. We then discuss potential sources of "missing heritability" and how functional genomics and multi-omics methods are employed to tackle this problem.

Entities:  

Keywords:  epigenetic inheritance; forward genetics; forward phenotyping; genetic heterogeneity; intermediate phenotypes; phenotypic heterogeneity; pulmonary arterial hypertension; reverse genetics; reverse phenotyping; whole-genome sequencing

Mesh:

Substances:

Year:  2020        PMID: 33256119      PMCID: PMC7760524          DOI: 10.3390/genes11121408

Source DB:  PubMed          Journal:  Genes (Basel)        ISSN: 2073-4425            Impact factor:   4.096


  340 in total

1.  Sox17 is required for normal pulmonary vascular morphogenesis.

Authors:  Alexander W Lange; Hans Michael Haitchi; Timothy D LeCras; Anusha Sridharan; Yan Xu; Susan E Wert; Jeanne James; Nicholas Udell; Philipp J Thurner; Jeffrey A Whitsett
Journal:  Dev Biol       Date:  2014-01-10       Impact factor: 3.582

2.  Genetic ablation of the BMPR2 gene in pulmonary endothelium is sufficient to predispose to pulmonary arterial hypertension.

Authors:  Kwon-Ho Hong; Young Jae Lee; Eunji Lee; Sung Ok Park; Chul Han; Hideyuki Beppu; En Li; Mohan K Raizada; Kenneth D Bloch; S Paul Oh
Journal:  Circulation       Date:  2008-07-28       Impact factor: 29.690

3.  A functional single-nucleotide polymorphism in the TRPC6 gene promoter associated with idiopathic pulmonary arterial hypertension.

Authors:  Ying Yu; Steve H Keller; Carmelle V Remillard; Olga Safrina; Ann Nicholson; Shenyuan L Zhang; Weihua Jiang; Nivruthi Vangala; Judd W Landsberg; Jian-Ying Wang; Patricia A Thistlethwaite; Richard N Channick; Ivan M Robbins; James E Loyd; Hossein A Ghofrani; Friedrich Grimminger; Ralph T Schermuly; Michael D Cahalan; Lewis J Rubin; Jason X-J Yuan
Journal:  Circulation       Date:  2009-04-20       Impact factor: 29.690

4.  Bone Morphogenic Protein Type 2 Receptor Mutation-Independent Mechanisms of Disrupted Bone Morphogenetic Protein Signaling in Idiopathic Pulmonary Arterial Hypertension.

Authors:  Jarrod W Barnes; Elif T Kucera; Liping Tian; Noël E Mellor; Nina Dvorina; William W Baldwin; Micheala A Aldred; Carol F Farver; Suzy A A Comhair; Metin Aytekin; Raed A Dweik
Journal:  Am J Respir Cell Mol Biol       Date:  2016-10       Impact factor: 6.914

5.  Inhibition of microRNA-302 (miR-302) by bone morphogenetic protein 4 (BMP4) facilitates the BMP signaling pathway.

Authors:  Hara Kang; Justin Louie; Alexandra Weisman; Jessica Sheu-Gruttadauria; Brandi N Davis-Dusenbery; Giorgio Lagna; Akiko Hata
Journal:  J Biol Chem       Date:  2012-09-17       Impact factor: 5.157

6.  DECIPHER: Database of Chromosomal Imbalance and Phenotype in Humans Using Ensembl Resources.

Authors:  Helen V Firth; Shola M Richards; A Paul Bevan; Stephen Clayton; Manuel Corpas; Diana Rajan; Steven Van Vooren; Yves Moreau; Roger M Pettett; Nigel P Carter
Journal:  Am J Hum Genet       Date:  2009-04-02       Impact factor: 11.025

Review 7.  Mitochondrial metabolism in pulmonary hypertension: beyond mountains there are mountains.

Authors:  Miranda K Culley; Stephen Y Chan
Journal:  J Clin Invest       Date:  2018-08-06       Impact factor: 14.808

8.  Exome Sequencing in Children With Pulmonary Arterial Hypertension Demonstrates Differences Compared With Adults.

Authors:  Na Zhu; Claudia Gonzaga-Jauregui; Carrie L Welch; Lijiang Ma; Hongjian Qi; Alejandra K King; Usha Krishnan; Erika B Rosenzweig; D Dunbar Ivy; Eric D Austin; Rizwan Hamid; William C Nichols; Michael W Pauciulo; Katie A Lutz; Ashley Sawle; Jeffrey G Reid; John D Overton; Aris Baras; Frederick Dewey; Yufeng Shen; Wendy K Chung
Journal:  Circ Genom Precis Med       Date:  2018-04

Review 9.  Writing, erasing and reading histone lysine methylations.

Authors:  Kwangbeom Hyun; Jongcheol Jeon; Kihyun Park; Jaehoon Kim
Journal:  Exp Mol Med       Date:  2017-04-28       Impact factor: 8.718

10.  Identification of a lysosomal pathway regulating degradation of the bone morphogenetic protein receptor type II.

Authors:  Hannah J Durrington; Paul D Upton; Simon Hoer; Jessica Boname; Benjamin J Dunmore; Jun Yang; Trina K Crilley; Lynn M Butler; David J Blackbourn; Gerard B Nash; Paul J Lehner; Nicholas W Morrell
Journal:  J Biol Chem       Date:  2010-09-24       Impact factor: 5.157

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  3 in total

Review 1.  Group 3 Pulmonary Hypertension: From Bench to Bedside.

Authors:  Navneet Singh; Peter Dorfmüller; Oksana A Shlobin; Corey E Ventetuolo
Journal:  Circ Res       Date:  2022-04-28       Impact factor: 23.213

2.  Pulmonary Arterial Hypertension: A Deeper Evaluation of Genetic Risk in the -Omics Era.

Authors:  Rajiv D Machado; Laura Southgate
Journal:  Genes (Basel)       Date:  2021-11-16       Impact factor: 4.096

3.  Common Variation in EDN1 Regulatory Regions Highlights the Role of PPARγ as a Key Regulator of Endothelin in vitro.

Authors:  Mauro Lago-Docampo; Carlos Solarat; Luis Méndez-Martínez; Adolfo Baloira; Diana Valverde
Journal:  Front Cardiovasc Med       Date:  2022-02-25
  3 in total

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