Literature DB >> 33255680

Optimisation of Urine Sample Preparation for Headspace-Solid Phase Microextraction Gas Chromatography-Mass Spectrometry: Altering Sample pH, Sulphuric Acid Concentration and Phase Ratio.

Prashant Aggarwal1,2, James Baker1,2, Mark T Boyd3, Séamus Coyle4,5, Chris Probert1, Elinor A Chapman1,4,6.   

Abstract

Headspace-solid phase microextraction gas chromatography-mass spectrometry (HS-SPME-GC-MS) can be used to measure volatile organic compounds (VOCs) in human urine. However, there is no widely adopted standardised protocol for the preparation of urine samples for analysis resulting in an inability to compare studies reliably between laboratories. This paper investigated the effect of altering urine sample pH, volume, and vial size for optimising detection of VOCs when using HS-SPME-GC-MS. This is the first, direct comparison of H2SO4, HCl, and NaOH as treatment techniques prior to HS-SPME-GC-MS analysis. Altering urine sample pH indicates that H2SO4 is more effective at optimising detection of VOCs than HCl or NaOH. H2SO4 resulted in a significantly larger mean number of VOCs being identified per sample (on average, 33.5 VOCs to 24.3 in HCl or 12.2 in NaOH treated urine) and more unique VOCs, produced a more diverse range of classes of VOCs, and led to less HS-SPME-GC-MS degradation. We propose that adding 0.2 mL of 2.5 M H2SO4 to 1 mL of urine within a 10 mL headspace vial is the optimal sample preparation prior to HS-SPME-GC-MS analysis. We hope the use of our optimised method for urinary HS-SPME-GC-MS analysis will enhance our understanding of human disease and bolster metabolic biomarker identification.

Entities:  

Keywords:  H2SO4; HCl; HS-SPME-GC-MS; NaOH; VOCs; hydrochloric acid; sodium hydroxide; vials; volatile organic compounds

Year:  2020        PMID: 33255680      PMCID: PMC7760603          DOI: 10.3390/metabo10120482

Source DB:  PubMed          Journal:  Metabolites        ISSN: 2218-1989


  51 in total

1.  Headspace solid-phase microextraction profiling of volatile compounds in urine: application to metabolic investigations.

Authors:  G A Mills; V Walker
Journal:  J Chromatogr B Biomed Sci Appl       Date:  2001-04-05

2.  The strengths and weaknesses of NMR spectroscopy and mass spectrometry with particular focus on metabolomics research.

Authors:  Abdul-Hamid M Emwas
Journal:  Methods Mol Biol       Date:  2015

3.  Volatile metabolomic signature of bladder cancer cell lines based on gas chromatography-mass spectrometry.

Authors:  Daniela Rodrigues; Joana Pinto; Ana Margarida Araújo; Sara Monteiro-Reis; Carmen Jerónimo; Rui Henrique; Maria de Lourdes Bastos; Paula Guedes de Pinho; Márcia Carvalho
Journal:  Metabolomics       Date:  2018-04-17       Impact factor: 4.290

Review 4.  A review of metabolomics approaches and their application in identifying causal pathways of childhood asthma.

Authors:  Kedir N Turi; Lindsey Romick-Rosendale; Kelli K Ryckman; Tina V Hartert
Journal:  J Allergy Clin Immunol       Date:  2017-05-04       Impact factor: 10.793

5.  Headspace solid-phase microextraction (HS-SPME) and liquid-liquid extraction (LLE): comparison of the performance in classification of ecstasy tablets. Part 2.

Authors:  Federica Bonadio; Pierre Margot; Olivier Delémont; Pierre Esseiva
Journal:  Forensic Sci Int       Date:  2008-11-07       Impact factor: 2.395

Review 6.  Metabolomics Profiling on Different Stages of Colorectal Cancer: A Systematic Review.

Authors:  Hazwani Mohd Yusof; Sharaniza Ab-Rahim; Leny Suzana Suddin; Mohd Shahril Ahmad Saman; Musalmah Mazlan
Journal:  Malays J Med Sci       Date:  2018-10-30

Review 7.  Digging deeper into volatile organic compounds associated with cancer.

Authors:  Sajjad Janfaza; Babak Khorsand; Maryam Nikkhah; Javad Zahiri
Journal:  Biol Methods Protoc       Date:  2019-11-27

8.  An investigation of fecal volatile organic metabolites in irritable bowel syndrome.

Authors:  Iftikhar Ahmed; Rosemary Greenwood; Ben de Lacy Costello; Norman M Ratcliffe; Chris S Probert
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

9.  Freeze-drying: an alternative method for the analysis of volatile organic compounds in the headspace of urine samples using solid phase micro-extraction coupled to gas chromatography - mass spectrometry.

Authors:  Raphael B M Aggio; Arno Mayor; Séamus Coyle; Sophie Reade; Tanzeela Khalid; Norman M Ratcliffe; Chris S J Probert
Journal:  Chem Cent J       Date:  2016-03-01       Impact factor: 4.215

10.  Volatile metabonomic profiling in urine to detect novel biomarkers for B-cell non-Hodgkin's lymphoma.

Authors:  Qingling Hua; Lin Wang; Chan Liu; Lingling Han; Yazhong Zhang; Hu Liu
Journal:  Oncol Lett       Date:  2018-03-26       Impact factor: 2.967

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  2 in total

1.  Investigation of urinary volatile organic compounds as novel diagnostic and surveillance biomarkers of bladder cancer.

Authors:  Lauren Lett; Michael George; Rachael Slater; Ben De Lacy Costello; Norman Ratcliffe; Marta García-Fiñana; Henry Lazarowicz; Chris Probert
Journal:  Br J Cancer       Date:  2022-03-29       Impact factor: 9.075

Review 2.  Volatilomics: An Emerging and Promising Avenue for the Detection of Potential Prostate Cancer Biomarkers.

Authors:  Cristina V Berenguer; Ferdinando Pereira; Jorge A M Pereira; José S Câmara
Journal:  Cancers (Basel)       Date:  2022-08-17       Impact factor: 6.575

  2 in total

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