Literature DB >> 33255667

Direct Meta-Analyses Reveal Unexpected Microbial Life in the Highly Radioactive Water of an Operating Nuclear Reactor Core.

Pauline C M Petit1, Olivier Pible2, Valérie Van Eesbeeck3, Claude Alban1, Gérard Steinmetz2, Mohamed Mysara3, Pieter Monsieurs3, Jean Armengaud2, Corinne Rivasseau1.   

Abstract

The pools of nuclear reactor facilities constitute harsh environments for life, bathed with ionizing radiation, filled with demineralized water and containing toxic radioactive elements. The very few studies published to date have explored water pools used to store spent nuclear fuels. Due to access restrictions and strong handling constraints related to the high radioactivity level, nothing is presently known about life in water pools that directly cool nuclear cores. In this work, we investigated the microbial communities in the cooling pool of the French Osiris nuclear reactor using direct meta-omics approaches, namely, DNA metabarcoding and proteotyping based on 16S ribosomal RNA gene sequencing and on peptide analysis, respectively. We identified 25 genera in the highly radioactive core water supply during operation with radionuclide activity higher than 3 × 109 Bq/m3. The prevailing genera Variovorax and Sphingomonas at operation were supplanted by Methylobacterium, Asanoa, and Streptomyces during shutdown. Variovorax might use dihydrogen produced by water radiolysis as an energy source.

Entities:  

Keywords:  16S rRNA amplicon sequencing; environmental microbiome; irradiation; metabarcoding; nuclear reactor; proteotyping

Year:  2020        PMID: 33255667      PMCID: PMC7760952          DOI: 10.3390/microorganisms8121857

Source DB:  PubMed          Journal:  Microorganisms        ISSN: 2076-2607


  23 in total

1.  Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.

Authors:  Alma E Parada; David M Needham; Jed A Fuhrman
Journal:  Environ Microbiol       Date:  2015-10-14       Impact factor: 5.491

2.  Biofilm formation in spent nuclear fuel pools and bioremediation of radioactive water.

Authors:  M Isabel Sarró; Ana M García; Diego A Moreno
Journal:  Int Microbiol       Date:  2005-09       Impact factor: 2.479

3.  Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Authors:  Patrick D Schloss; Sarah L Westcott; Thomas Ryabin; Justine R Hall; Martin Hartmann; Emily B Hollister; Ryan A Lesniewski; Brian B Oakley; Donovan H Parks; Courtney J Robinson; Jason W Sahl; Blaz Stres; Gerhard G Thallinger; David J Van Horn; Carolyn F Weber
Journal:  Appl Environ Microbiol       Date:  2009-10-02       Impact factor: 4.792

4.  Ocean plankton. Structure and function of the global ocean microbiome.

Authors:  Shinichi Sunagawa; Luis Pedro Coelho; Samuel Chaffron; Jens Roat Kultima; Karine Labadie; Guillem Salazar; Bardya Djahanschiri; Georg Zeller; Daniel R Mende; Adriana Alberti; Francisco M Cornejo-Castillo; Paul I Costea; Corinne Cruaud; Francesco d'Ovidio; Stefan Engelen; Isabel Ferrera; Josep M Gasol; Lionel Guidi; Falk Hildebrand; Florian Kokoszka; Cyrille Lepoivre; Gipsi Lima-Mendez; Julie Poulain; Bonnie T Poulos; Marta Royo-Llonch; Hugo Sarmento; Sara Vieira-Silva; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Chris Bowler; Colomban de Vargas; Gabriel Gorsky; Nigel Grimsley; Pascal Hingamp; Daniele Iudicone; Olivier Jaillon; Fabrice Not; Hiroyuki Ogata; Stephane Pesant; Sabrina Speich; Lars Stemmann; Matthew B Sullivan; Jean Weissenbach; Patrick Wincker; Eric Karsenti; Jeroen Raes; Silvia G Acinas; Peer Bork
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

5.  Taking the shortcut for high-throughput shotgun proteomic analysis of bacteria.

Authors:  Erica Marie Hartmann; François Allain; Jean-Charles Gaillard; Olivier Pible; Jean Armengaud
Journal:  Methods Mol Biol       Date:  2014

6.  Coccomyxa actinabiotis sp. nov. (Trebouxiophyceae, Chlorophyta), a new green microalga living in the spent fuel cooling pool of a nuclear reactor.

Authors:  Corinne Rivasseau; Emmanuel Farhi; Estelle Compagnon; Diane de Gouvion Saint Cyr; Robert van Lis; Denis Falconet; Marcel Kuntz; Ariane Atteia; Alain Couté
Journal:  J Phycol       Date:  2016-08-24       Impact factor: 2.923

7.  The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies.

Authors:  J Paul Brooks; David J Edwards; Michael D Harwich; Maria C Rivera; Jennifer M Fettweis; Myrna G Serrano; Robert A Reris; Nihar U Sheth; Bernice Huang; Philippe Girerd; Jerome F Strauss; Kimberly K Jefferson; Gregory A Buck
Journal:  BMC Microbiol       Date:  2015-03-21       Impact factor: 3.605

8.  Assessing species biomass contributions in microbial communities via metaproteomics.

Authors:  Manuel Kleiner; Erin Thorson; Christine E Sharp; Xiaoli Dong; Dan Liu; Carmen Li; Marc Strous
Journal:  Nat Commun       Date:  2017-11-16       Impact factor: 14.919

9.  From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data.

Authors:  Mohamed Mysara; Mercy Njima; Natalie Leys; Jeroen Raes; Pieter Monsieurs
Journal:  Gigascience       Date:  2017-02-01       Impact factor: 6.524

10.  Estimating relative biomasses of organisms in microbiota using "phylopeptidomics".

Authors:  Olivier Pible; François Allain; Virginie Jouffret; Karen Culotta; Guylaine Miotello; Jean Armengaud
Journal:  Microbiome       Date:  2020-03-06       Impact factor: 14.650

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