Literature DB >> 33252079

Construction of MRI-Based Alzheimer's Disease Score Based on Efficient 3D Convolutional Neural Network: Comprehensive Validation on 7,902 Images from a Multi-Center Dataset.

Evangeline Yee1, Da Ma1, Karteek Popuri1, Lei Wang2, Mirza Faisal Beg1.   

Abstract

BACKGROUND: In recent years, many convolutional neural networks (CNN) have been proposed for the classification of Alzheimer's disease. Due to memory constraints, many of the proposed CNNs work at a 2D slice-level or 3D patch-level.
OBJECTIVE: Here, we propose a subject-level 3D CNN that can extract the neurodegenerative patterns of the whole brain MRI and converted into a probabilistic Dementia score.
METHODS: We propose an efficient and lightweight subject-level 3D CNN featuring dilated convolutions. We trained our network on the ADNI data on stable Dementia of the Alzheimer's type (sDAT) from stable normal controls (sNC). To comprehensively evaluate the generalizability of our proposed network, we performed four independent tests which includes testing on images from other ADNI individuals at various stages of the dementia, images acquired from other sites (AIBL), images acquired using different protocols (OASIS), and longitudinal images acquired over a short period of time (MIRIAD).
RESULTS: We achieved a 5-fold cross-validated balanced accuracy of 88%in differentiating sDAT from sNC, and an overall specificity of 79.5%and sensitivity 79.7%on the entire set of 7,902 independent test images.
CONCLUSION: Independent testing is essential for estimating the generalization ability of the network to unseen data, but is often lacking in studies using CNN for DAT classification. This makes it difficult to compare the performances achieved using different architectures. Our comprehensive evaluation highlighting the competitive performance of our network and potential promise for generalization.

Entities:  

Keywords:  3D CNN; dementia of Alzheimer’s type (DAT); magnetic resonance imaging

Mesh:

Year:  2021        PMID: 33252079      PMCID: PMC9159475          DOI: 10.3233/JAD-200830

Source DB:  PubMed          Journal:  J Alzheimers Dis        ISSN: 1387-2877            Impact factor:   4.160


  28 in total

1.  Individual subject classification for Alzheimer's disease based on incremental learning using a spatial frequency representation of cortical thickness data.

Authors:  Youngsang Cho; Joon-Kyung Seong; Yong Jeong; Sung Yong Shin
Journal:  Neuroimage       Date:  2011-10-08       Impact factor: 6.556

Review 2.  The clinical use of structural MRI in Alzheimer disease.

Authors:  Giovanni B Frisoni; Nick C Fox; Clifford R Jack; Philip Scheltens; Paul M Thompson
Journal:  Nat Rev Neurol       Date:  2010-02       Impact factor: 42.937

3.  View-centralized multi-atlas classification for Alzheimer's disease diagnosis.

Authors:  Mingxia Liu; Daoqiang Zhang; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2015-01-27       Impact factor: 5.038

4.  Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database.

Authors:  Rémi Cuingnet; Emilie Gerardin; Jérôme Tessieras; Guillaume Auzias; Stéphane Lehéricy; Marie-Odile Habert; Marie Chupin; Habib Benali; Olivier Colliot
Journal:  Neuroimage       Date:  2010-06-11       Impact factor: 6.556

Review 5.  A review on neuroimaging-based classification studies and associated feature extraction methods for Alzheimer's disease and its prodromal stages.

Authors:  Saima Rathore; Mohamad Habes; Muhammad Aksam Iftikhar; Amanda Shacklett; Christos Davatzikos
Journal:  Neuroimage       Date:  2017-04-13       Impact factor: 6.556

6.  Fully automatic hippocampus segmentation and classification in Alzheimer's disease and mild cognitive impairment applied on data from ADNI.

Authors:  Marie Chupin; Emilie Gérardin; Rémi Cuingnet; Claire Boutet; Louis Lemieux; Stéphane Lehéricy; Habib Benali; Line Garnero; Olivier Colliot
Journal:  Hippocampus       Date:  2009-06       Impact factor: 3.899

7.  Alzheimer's disease diagnosis based on multiple cluster dense convolutional networks.

Authors:  Fan Li; Manhua Liu
Journal:  Comput Med Imaging Graph       Date:  2018-10-02       Impact factor: 4.790

8.  The Alzheimer's Disease Neuroimaging Initiative (ADNI): MRI methods.

Authors:  Clifford R Jack; Matt A Bernstein; Nick C Fox; Paul Thompson; Gene Alexander; Danielle Harvey; Bret Borowski; Paula J Britson; Jennifer L Whitwell; Chadwick Ward; Anders M Dale; Joel P Felmlee; Jeffrey L Gunter; Derek L G Hill; Ron Killiany; Norbert Schuff; Sabrina Fox-Bosetti; Chen Lin; Colin Studholme; Charles S DeCarli; Gunnar Krueger; Heidi A Ward; Gregory J Metzger; Katherine T Scott; Richard Mallozzi; Daniel Blezek; Joshua Levy; Josef P Debbins; Adam S Fleisher; Marilyn Albert; Robert Green; George Bartzokis; Gary Glover; John Mugler; Michael W Weiner
Journal:  J Magn Reson Imaging       Date:  2008-04       Impact factor: 4.813

9.  OASIS is Automated Statistical Inference for Segmentation, with applications to multiple sclerosis lesion segmentation in MRI.

Authors:  Elizabeth M Sweeney; Russell T Shinohara; Navid Shiee; Farrah J Mateen; Avni A Chudgar; Jennifer L Cuzzocreo; Peter A Calabresi; Dzung L Pham; Daniel S Reich; Ciprian M Crainiceanu
Journal:  Neuroimage Clin       Date:  2013-03-15       Impact factor: 4.881

10.  MIRIAD--Public release of a multiple time point Alzheimer's MR imaging dataset.

Authors:  Ian B Malone; David Cash; Gerard R Ridgway; David G MacManus; Sebastien Ourselin; Nick C Fox; Jonathan M Schott
Journal:  Neuroimage       Date:  2012-12-28       Impact factor: 6.556

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  4 in total

1.  Early diagnosis of Alzheimer's disease on ADNI data using novel longitudinal score based on functional principal component analysis.

Authors:  Haolun Shi; Da Ma; Yunlong Nie; Mirza Faisal Beg; Jian Pei; Jiguo Cao; The Alzheimer's Disease Neuroimaging Initiative
Journal:  J Med Imaging (Bellingham)       Date:  2021-04-21

2.  Blinded Clinical Evaluation for Dementia of Alzheimer's Type Classification Using FDG-PET: A Comparison Between Feature-Engineered and Non-Feature-Engineered Machine Learning Methods.

Authors:  Da Ma; Evangeline Yee; Jane K Stocks; Lisanne M Jenkins; Karteek Popuri; Guillaume Chausse; Lei Wang; Stephan Probst; Mirza Faisal Beg
Journal:  J Alzheimers Dis       Date:  2021       Impact factor: 4.472

3.  On the reliability of deep learning-based classification for Alzheimer's disease: Multi-cohorts, multi-vendors, multi-protocols, and head-to-head validation.

Authors:  Yeong-Hun Song; Jun-Young Yi; Young Noh; Hyemin Jang; Sang Won Seo; Duk L Na; Joon-Kyung Seong
Journal:  Front Neurosci       Date:  2022-09-07       Impact factor: 5.152

4.  A new classification network for diagnosing Alzheimer's disease in class-imbalance MRI datasets.

Authors:  Ziyang Chen; Zhuowei Wang; Meng Zhao; Qin Zhao; Xuehu Liang; Jiajian Li; Xiaoyu Song
Journal:  Front Neurosci       Date:  2022-08-25       Impact factor: 5.152

  4 in total

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