Literature DB >> 33245101

Immune-associated biomarkers for early diagnosis of Parkinson's disease based on hematological lncRNA-mRNA co-expression.

Kecheng Lei1, Liwen Zhang2, Yijing He1, Hui Sun1, Weifang Tong1, Yichun Xu2, Lingjing Jin1.   

Abstract

Early stage diagnosis of Parkinson's disease (PD) is challenging without significant motor symptoms. The identification of effective molecular biomarkers as a hematological indication of PD may help improve the diagnostic timeliness and accuracy. In this paper, we analyzed and compared the blood samples of PD and control (CTR) patients to identify the disease-related changes and determine the putative biomarkers for PD diagnosis. Based on the RNA sequencing analysis, differentially expressed genes (DEGs) were identified, and the co-expression network of DEGs was constructed using the weighted correlation network analysis (WGCNA). The analysis leads to the identification of 87 genes that were exclusively regulated in the PD group, whereas 66 genes were significantly increased and 21 genes were significantly decreased in contrast to the control group. The results indicate that the core lncRNA-mRNA co-expression network greatly changes the immune response in PD patients. Specifically, the results showed that PWAR6, LINC00861, AC83843.1, IRF family, IFIT family and CaMK4 may play important roles in the immune system of PD. Based on the findings from this the present study, future research aims at identify novel therapeutic strategies for PD. Copyright 2020 The Author(s).

Entities:  

Keywords:  Biomarkers; Immune response; Integrative genomics; LncRNA-mRNA coexpression network; Parkinson’s disease

Year:  2020        PMID: 33245101      PMCID: PMC7753636          DOI: 10.1042/BSR20202921

Source DB:  PubMed          Journal:  Biosci Rep        ISSN: 0144-8463            Impact factor:   3.840


  61 in total

1.  Alterations of T-lymphocyte populations in Parkinson disease.

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Journal:  Parkinsonism Relat Disord       Date:  2005-09-09       Impact factor: 4.891

2.  Cerebrospinal fluid biomarkers for Parkinson disease diagnosis and progression.

Authors:  Min Shi; Joshua Bradner; Aneeka M Hancock; Kathryn A Chung; Joseph F Quinn; Elaine R Peskind; Douglas Galasko; Joseph Jankovic; Cyrus P Zabetian; Hojoong M Kim; James B Leverenz; Thomas J Montine; Carmen Ginghina; Un Jung Kang; Kevin C Cain; Yu Wang; Jan Aasly; David Goldstein; Jing Zhang
Journal:  Ann Neurol       Date:  2011-03-11       Impact factor: 10.422

3.  Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.

Authors:  Mihaela Pertea; Daehwan Kim; Geo M Pertea; Jeffrey T Leek; Steven L Salzberg
Journal:  Nat Protoc       Date:  2016-08-11       Impact factor: 13.491

4.  Interferon Regulatory Factor 8 (IRF8) Impairs Induction of Interferon Induced with Tetratricopeptide Repeat Motif (IFIT) Gene Family Members.

Authors:  Christine L White; Patricia M Kessler; Benjamin K Dickerman; Keiko Ozato; Ganes C Sen
Journal:  J Biol Chem       Date:  2016-05-02       Impact factor: 5.157

5.  Calmodulin-dependent kinase IV links Toll-like receptor 4 signaling with survival pathway of activated dendritic cells.

Authors:  Maddalena Illario; Maria L Giardino-Torchia; Uma Sankar; Thomas J Ribar; Mario Galgani; Laura Vitiello; Anna Maria Masci; Francesca R Bertani; Elena Ciaglia; Dalila Astone; Giuseppe Maulucci; Anna Cavallo; Mario Vitale; Vincenzo Cimini; Lucio Pastore; Anthony R Means; Guido Rossi; Luigi Racioppi
Journal:  Blood       Date:  2007-10-01       Impact factor: 22.113

6.  CaMK4-dependent activation of AKT/mTOR and CREM-α underlies autoimmunity-associated Th17 imbalance.

Authors:  Tomohiro Koga; Christian M Hedrich; Masayuki Mizui; Nobuya Yoshida; Kotaro Otomo; Linda A Lieberman; Thomas Rauen; José C Crispín; George C Tsokos
Journal:  J Clin Invest       Date:  2014-03-25       Impact factor: 14.808

7.  Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.

Authors:  Michael I Love; Wolfgang Huber; Simon Anders
Journal:  Genome Biol       Date:  2014       Impact factor: 13.583

8.  Editorial: Peripheral Immunity in Parkinson's Disease: Emerging Role and Novel Target for Therapeutics.

Authors:  Cristoforo Comi; Marco Cosentino; Rodrigo Pacheco
Journal:  Front Neurol       Date:  2019-10-15       Impact factor: 4.003

Review 9.  Neuroimmunological processes in Parkinson's disease and their relation to α-synuclein: microglia as the referee between neuronal processes and peripheral immunity.

Authors:  Vanesa Sanchez-Guajardo; Christopher J Barnum; Malú G Tansey; Marina Romero-Ramos
Journal:  ASN Neuro       Date:  2013-04-30       Impact factor: 4.146

10.  Parent of origin gene expression in a founder population identifies two new candidate imprinted genes at known imprinted regions.

Authors:  Sahar V Mozaffari; Michelle M Stein; Kevin M Magnaye; Dan L Nicolae; Carole Ober
Journal:  PLoS One       Date:  2018-09-11       Impact factor: 3.240

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