| Literature DB >> 33240313 |
Carlos Alva-Diaz1, Christoper A Alarcon-Ruiz2, Kevin Pacheco-Barrios2, Nicanor Mori3, Josmel Pacheco-Mendoza4, Bryan J Traynor5, Andrea Rivera-Valdivia6,7,8, Pongtawat Lertwilaiwittaya9, Thomas D Bird10,11, Mario Cornejo-Olivas6,12.
Abstract
Introduction: Patients with Huntington-Like disorders (HLD) comprise a variety of allelic disorders sharing a Huntington phenotype. The hexanucleotide repeat expansion of the C9orf72 gene could explain part of the HLD etiology. We aimed to conduct a systematic review and meta-analysis looking for the frequency of the hexanucleotide repeat expansion of the C9orf72 gene in HLD patients.Entities:
Keywords: C9orf72; Huntington like disorders; chorea; prevalence studies; systematic review
Year: 2020 PMID: 33240313 PMCID: PMC7667021 DOI: 10.3389/fgene.2020.551780
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Figure 1Study flow diagram. We included 210 records in the initial review, 7 more in the updated review and 2 more from other sources. Finally, we included 10 studies in the synthesis.
Descriptive information on each article included in the systematic review.
| Hensman Moss et al. ( | United Kingdom | 514 | HLD patients who underwent negative diagnostic genetic testing for HD at NHNN | 1.95% ( | – | Early psychiatric, and behavioral problems. Chorea, dystonia, myoclonus, tremor, rigidity, and bradykinesia. Memory problems and cognitive impairment | NA | 42.7 years | Fragment length analysis on an 3730xl automated sequencer. Then, analysis of repeat primed PCR electropherograms using Peak Scanner. Expansions were identified and put forward for Southern blotting with subsequent hybridization |
| Kostic et al. ( | Serbia | 39 | HLD patients who underwent negative diagnostic genetic testing for HD and assessed by a specialist. All patients have Serbian ethnic background | 2.56% ( | - | Chorea, oro-buccolingual dyskinesia and motor impersistence. Memory problems and change in personality | Female | 51 years | Fragment length analysis on an 3500xl genetic analyzer. Then, analysis of repeat primed PCR. Expansions were identified and put forward for Southern with subsequent hybridization |
| Koutsis et al. ( | Greece | 40 | HLD patients who underwent negative diagnostic genetic testing for HD at Neurogenetics Unit at the 1st Department of Neurology, University of Athens Medical School | 5% ( | - | Change in personality, chorea, and parkinsonism. Problems with concentration and memory. Spastic dysarthria and emotional lability | Female and male | 42.5 years | “Sizing polymerase chain reaction (PCR)” and repeat primed PCR using KAPA Long-Range DNA polymerase. Allele identification and scoring were carried out using GeneScan v3.7 software |
| Fedotova et al. ( | Russia | 31 | Russian cohort of HLD patients | 0% | 9.68% ( | NA | NA | NA | Genomic DNA isolated with Wizar genomic DNA purification kit analysis of repeat primed PCR. Allele identification with sequencing analysis v.5.2 software. |
| Mariani et al. ( | France | 23 | HLD patients who underwent negative diagnostic genetic testing for HD at Department of Genetics of the Pitié-Salpêtrière University Hospital (Paris, France) | 0% | – | NA | NA | NA | Repeat expansions in |
| Martins et al. ( | Portugal | 20 | HLD patients cohort from a tertiary center | 5% ( | 5% ( | Psychotic episodes, and behavioral disfunction. Hand tremor, symmetrical parkinsonism, dystonia, and orolingual chorea. Progressive cognitive decline | Female | 50 years | First, repeat-primed PCR amplification and then, fragment length analysis on an ABIPrism 3130xl sequencer and fragments were analyzed through the GeneMapper software |
| Baine et al. ( | South Africa | 97 | Database of black South African patients' samples | 0% | – | NA | NA | NA | Repeat expansions in |
| Ida et al. ( | North America | 236 | Database of patients' samples referred for clinical diagnosis or research to Mayo Clinic Genomics Laboratory | 1.27% ( | 0.42% ( | NA | NA | NA | Fragment length analysis on an 3730xl genetic analyzer. Then, analysis of repeat primed PCR. Expansions were identified and put forward for Southern with subsequent hybridization |
| Rikos et al. ( | Greece | 74 | HLD patients who underwent negative diagnostic genetic testing for HD at AHEPA University General Hospital and University Hospital of Larissa | 1.35% ( | – | Choreiform movements of the extremities and depression | Male | 48 years | First, PCR amplification and then, fragment length analysis on an ABIPrism 3730xl sequencer. Expansions were identified and put forward for Southern with subsequent hybridization |
| Kaur et al. ( | India | 49 | Unrelated cases referred (from major Indian neurological clinics/academic institutes) with clinical diagnosis of HD and its differentials enrolled in the CSIR-GOMED project | 0% | NA | NA | NA | Repeat expansions in |
Summary statistics from patients harboring the C9orf72 hexanucleotide repeat expansion. HD, Huntington Disease; HLD, Huntington-Like Disorder; NA, Not applicable or not available; NHNN, Neurogenetics Unit of the National Hospital for Neurology and Neurosurgery, London.
Quality assessment of each article included in the systematic review.
| Hensman Moss et al. ( | Cross-sectional | + | ++ | ++ | + | 6/10 | ||||
| Kostic et al. ( | Cross-sectional | + | + | ++ | ++ | + | 7/10 | |||
| Koutsis et al. ( | Cross-sectional | + | + | ++ | ++ | + | 7/10 | |||
| Mariani et al. ( | Cross-sectional | + | + | ++ | ++ | + | 7/10 | |||
| Martins et al. ( | Cross-sectional | + | + | ++ | ++ | + | 7/10 | |||
| Baine et al. ( | Cross-sectional | + | + | ++ | ++ | + | 7/10 | |||
| Ida et al. ( | Cross-sectional | + | + | ++ | ++ | + | 7/10 | |||
| Kaur et al. ( | Cross-sectional | + | ++ | + | 4/10 | |||||
| Rikos et al. ( | Case-control | + | + | + | + | + | + | + | 7/9 | |
| Fedotova et al. ( | Case-control | + | + | + | + | + | + | 6/9 | ||
HLD, Huntington-Like Disorder.
Figure 2Percentage of C9orf72 hexanucleotide repeat expansion in Huntington Disease-Like patients. Meta-analysis of 10 studies for prevalence of C9orf72 hexanucleotide full repeat expansion in Huntington Disease-Like patients. ES, Estimated proportion; 95% CI, 95% Confidence interval.
Figure 3Percentage of C9orf72 “intermediate allele” expansion in Huntington Disease-Like patients. Meta-analysis of three studies for prevalence of C9orf72 hexanucleotide “intermediate allele” repeat expansion in Huntington Disease-Like patients. ES, Estimated proportion; 95% CI, 95% Confidence interval.
Figure 4Sensitivity analysis of percentage of C9orf72 hexanucleotide repeat expansion in Huntington Disease-Like patients, without studies with zero results. Meta-analysis of six studies for prevalence of C9orf72 hexanucleotide repeat expansion in Huntington Disease-Like patients, excluding articles which report no C9orf72 hexanucleotide repeat expansion patient. ES, Estimated proportion; 95% CI, 95% Confidence interval.