| Literature DB >> 33239383 |
Karissa Culbreath1, Heather Piwonka2, John Korver3, Mir Noorbakhsh4.
Abstract
Automation in clinical microbiology is starting to become more commonplace and reportedly offers several advantages over the manual laboratory. Most studies have reported on the rapid turnaround times for culture results, including times for identification of pathogens and their respective antimicrobial susceptibilities, but few have studied the benefits from a laboratory efficiency point of view. This is the first large, multicenter study in North America to report on the benefits derived from automation measured in full-time equivalents (FTE), FTE reallocation, productivity, cost per specimen, and cost avoidance. Pre- and post-full automation audits were done at 4 laboratories that have vastly different culture volumes, and results show that regardless of the size of the facility, improved efficiencies can be realized after implementation of full laboratory automation.Entities:
Keywords: efficiency; laboratory automation
Year: 2021 PMID: 33239383 PMCID: PMC8106725 DOI: 10.1128/JCM.01969-20
Source DB: PubMed Journal: J Clin Microbiol ISSN: 0095-1137 Impact factor: 5.948
Laboratory instrumentation and workflow overview
| Condition | Instrumentation or workflow overview for: | |||
|---|---|---|---|---|
| WKL | TC | HRMLP | SHSL | |
| Pre-FLA instrumentation | None | None | None | 2 WASP |
| Post-FLA instrumentation | 2 WASP, 1 track line, 3 incubators | 1 WASP, 2 incubators | 2 WASP, 1 track line, 3 incubators | 3 WASP, 2 track lines, 6 incubators |
| Specimen processing | Pre-FLA, 24/7 with 70% of volume processed off-site; post-FLA, 24/7 with 100% volume processed on-site | Pre-FLA, 24/7; post-FLA, 24/7 | Pre-FLA, 24/7; post-FLA, 24/7 | Pre-FLA, 24/7; post-FLA, 24/7 |
| Culture workup | Pre-FLA, 08:00–19:00; post-FLA, 24/7 | Pre-FLA, workup 07:00–00:30; post-FLA, 05:30-02:30 | Pre-FLA, 08:00–17:00; post-FLA, 08:00–23:00 (positive blood cultures: 24/7) | Pre-FLA, 24/7; post-FLA, 24/7 |
| Specimens/collections processed by WASP/FLA (percent of laboratory volume) | Urine, MRSA, ESwab, GBS, body fluid, positive blood culture (87% FLA) | Urine, MRSA, ESwab, respiratory, GAS, body fluid, disc diffusion AST (90% WASP; 81% FLA) | Urine, MRSA, VRE, GAS, CSF, positive blood culture (88% WASP; 80% FLA) | Urine, MRSA, GAS, GBS, body fluid, stool (96% FLA) |
| Segregation algorithms | No | Yes: urine | Yes: urine, MRSA, VRE, MRSA/VRE biplate | Yes: urine, MRSA |
| Years between pre- and post-FLA analysis | 3 | 5 | 8 | 3 |
WLK, Willis-Knighton Laboratory; TC, TriCore Reference Laboratories; HRMLP, Hamilton Regional Medicine Laboratory Program; SHSL, Sutter Health Shared Laboratory; WASP, Walk-Away specimen processor; FLA, full laboratory automation; MRSA, screening culture for MRSA; GBS, screening culture for group B Streptococcus; GAS, screening culture for group A Streptococcus; AST, antimicrobial susceptibility testing; VRE, screening culture for VRE; ESwab, specimens collected in ESwab devices; CSF, cerebrospinal fluid.
Pre- and post-FLA metrics
| Lab and metric | Pre-FLA | Post-FLA | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| FTE | Total labor cost/day ($) | Specimen vol: peak day | Specimens/FTE (productivity) | Labor cost/specimen ($) | FTE | Total labor cost/day ($) | Specimen vol: peak day | Specimens/FTE (productivity) | Labor cost/specimen ($) | |
| WKL | ||||||||||
| Processing | 2.9 | 317.81 | 222 | 77 | 1.43 | 2 | 219.18 | 325 | 163 | 0.67 |
| Culture Work up | 5 | 958.90 | 222 | 44 | 4.32 | 4 | 767.12 | 325 | 81 | 2.36 |
| Total | 7.9 | 1,276.71 | 222 | 28 | 5.75 | 6 | 986.30 | 325 | 54 | 3.03 |
| TC | ||||||||||
| Processing | 7 | 1,150.68 | 872 | 125 | 1.32 | 4 | 657.52 | 1,083 | 271 | 0.61 |
| Culture Work up | 9 | 2,219.18 | 872 | 97 | 2.54 | 12 | 2,794.51 | 1,083 | 90 | 2.58 |
| Total | 16 | 3,369.86 | 872 | 55 | 3.86 | 16 | 3,452.03 | 1,083 | 68 | 3.19 |
| HRMLP | ||||||||||
| Processing | 5 | 821.92 | 957 | 191 | 0.86 | 7 | 1,150.68 | 1,565 | 224 | 0.74 |
| Culture Work up | 18 | 4,438.36 | 957 | 53 | 4.64 | 17 | 4,191.78 | 1,565 | 92 | 2.68 |
| Total | 23 | 5,260.27 | 957 | 42 | 5.50 | 24 | 5,342.47 | 1,565 | 65 | 3.41 |
| SHSL | ||||||||||
| Processing | 13 | 2,315.07 | 1,125 | 87 | 2.06 | 13 | 2,315.07 | 1,648 | 87 | 2.06 |
| Culture Work up | 17 | 5,775.34 | 1,125 | 66 | 5.13 | 23.5 | 7,720.62 | 1,648 | 70 | 4.68 |
| Total | 30 | 8,090.41 | 1,125 | 38 | 7.19 | 36.5 | 10,035.69 | 1,648 | 45 | 6.09 |
Some laboratories provided actual FTE salaries while others preferred to use a national average of $90,000/year for a clinical laboratory scientist and $60,000/year for a laboratory assistant.
FTE savings with FLA
| Lab and metric | Pre-FLA | FLA | Direct savings FLA | FTE needed without FLA | FTE savings cost avoidance with growth | Total FTE savings (direct savings + cost avoidance) | Total FTE cost savings/yr ($) |
|---|---|---|---|---|---|---|---|
| WKL | |||||||
| Peak volume | 222 | 325 | 325 | 325 | |||
| Processing | 2.9 | 2 | 0.9 | 4.2 | 1.3 | 2.2 | 89,819.82 |
| Workup | 5 | 4 | 1 | 7.3 | 2.3 | 3.3 | 232,387.39 |
| Total | 7.9 | 6 | 1.9 | 11.6 | 3.7 | 5.6 | 322,207.21 |
| TC | |||||||
| Volume | 872 | 1,083 | 1,083 | 1,083 | |||
| Processing | 7 | 4 | 3 | 8.7 | 1.7 | 4.7 | 281,628.44 |
| Workup AST | 2 | −2 | −2.0 | (120,000.00) | |||
| Workup | 9 | 10 | −1 | 11.2 | 2.2 | 1.2 | 105,997.71 |
| Total | 16 | 16 | 0 | 19.9 | 3.9 | 3.9 | 267,626.15 |
| HRMLP | |||||||
| Volume | 957 | 1565 | 1565 | 1565 | |||
| Processing | 5 | 7 | −2 | 8.2 | 3.2 | 1.2 | 70,595.61 |
| Workup | 18 | 17 | 1 | 29.4 | 11.4 | 12.4 | 1,119,216.30 |
| Total | 23 | 24 | −1 | 37.6 | 14.6 | 13.6 | 1,189,811.91 |
| SHSL | |||||||
| Volume | 1125 | 1648 | 1,648 | 1,648 | |||
| Processing | 13 | 13 | 0 | 19.0 | 6.0 | 6.0 | 392,831.00 |
| Workup AST | 4 | −4 | −4.0 | (400,000.00) | |||
| Workup | 17 | 19.5 | −2.5 | 24.9 | 7.9 | 5.4 | 669,985.78 |
| Total | 30 | 36.5 | −6.5 | 43.9 | 13.9 | 7.4 | 662,816.78 |
FIG 1Turnaround times for TC through evaluation period. Pre-WASP 2015, no automation in the clinical laboratory; WASP 2015, initial implementation of the WASP alone; FLA 2016, initial integration of FLA; FLA 2018, implementation of algorithm-assisted FLA.