| Literature DB >> 33235068 |
Dan-Hui Fu1, Wen-Juan Deng1, Zhi Yang2, Sen Hong1, Qian-Lin Ding1, Yang Zhao1, Jia Chen1, Dan-Ke Su1.
Abstract
BACKGROUND: This study meta-analyzed the literature on possible association of 3 polymorphisms (-592, -1082, -819) in the interleukin-10 (IL-10) gene with susceptibility to human immunodeficiency virus (HIV)-1 infection.Entities:
Mesh:
Substances:
Year: 2020 PMID: 33235068 PMCID: PMC7710169 DOI: 10.1097/MD.0000000000023069
Source DB: PubMed Journal: Medicine (Baltimore) ISSN: 0025-7974 Impact factor: 1.889
Methodological quality of studies included in the meta-analysis, based on the Newcastle–Ottawa Scale for assessing the quality of case–control studies.
| Selection (score) | Comparability (score) | Exposure (score) | |||||||
| Study | Adequate definition of patient cases | Representativeness of patient cases | Selection of controls | Definition of controls | Control for important factor or additional factor | Ascertainment of exposure (blinding) | Same method of ascertainment for participants | Non-response rate∗ | Total Score† |
| Erikstrup[ | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 7 |
| Chatterjee[ | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 6 |
| Naicker[ | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 6 |
| Sobti[ | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 6 |
| Sunder[ | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 6 |
| Corchado[ | 1 | 1 | 0 | 1 | 2 | 0 | 1 | 1 | 7 |
| Piddubna[ | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 6 |
| Freitas[ | 1 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 6 |
| Ramezani[ | 1 | 1 | 0 | 1 | 2 | 0 | 1 | 1 | 7 |
| Kallas[ | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 6 |
| Singh[ | 1 | 1 | 1 | 1 | 2 | 0 | 1 | 1 | 8 |
Figure 1Flowchart of study selection.
Characteristics of studies included in the meta-analysis.
| Sample size (n) | ||||||||
| First author | Year | Ethnicity | Country | Testing method | Control source | Cases | Controls | SNP |
| Erikstrup[ | 2007 | African | Zimbabwe | PCR | Population-based healthy volunteers | 198 | 180 | IL-10 -1082 |
| Chatterjee[ | 2009 | Asian | India | PCR-RFLP | Hospital-based healthy volunteers | 180 | 305 | IL-10 -592; IL-10 -1082; IL-10 -819 |
| Naicker[ | 2009 | Caucasian | South Africa | ARMS-PCR | Hospital-based healthy volunteers | 64 | 195 | IL-10 -592; IL-10 -1082 |
| Sobti[ | 2010 | Asian | India | PCR-RFLP | Hospital-based healthy volunteers | 300 | 300 | IL-10 -592; IL-10 -1082 |
| Sunder[ | 2012 | Asian | India | PCR-RFLP | Hospital-based healthy volunteers | 121 | 102 | IL-10 -1082 |
| Corchado[ | 2013 | Caucasian | Spain | PCR | Hospital-based healthy volunteers | 91 | 55 | IL-10 -592 |
| Piddubna[ | 2013 | Caucasian | Ukraine | PCR-RFLP | Population-based healthy volunteers | 78 | 100 | IL-10 -592 |
| Freitas[ | 2015 | Mixed | Brazil | PCR-RFLP | Hospital-based healthy volunteers | 216 | 294 | IL-10 -1082 |
| Ramezani[ | 2015 | Asian | Iran | PCR | Hospital-based healthy volunteers | 70 | 31 | IL-10 -592 |
| Kallas[ | 2015 | Caucasian | Estonia | TaqMan | Population-based healthy volunteers | 172 | 496 | IL-10 -592; IL-10 -1082 |
| Singh[ | 2016 | Asian | India | PCR-RFLP | Population-based healthy volunteers | 260 | 260 | IL-10 -592; IL-10 -1082; IL-10 -819 |
Overall meta-analysis of the association between HIV-1 infection and IL-10 -592, -1082, and -819 polymorphisms.
| Heterogeneity of study design | ||||||
| Genetic model | OR [95% CI] | χ2 | df ( | Analysis model | ||
| IL-10 -592 in total population from 9 case control studies (1405 cases and 1,842 controls) | ||||||
| Allelic model (A-allele vs. C-allele) | 1.10 [0.99, 1.44] | 1.90 (.06) | 19.02 | 8 (.01) | 58 | Random |
| Recessive model (AA vs. CA + CC) | 1.44 [1.06, 1.96] | 2.31 (.02) | 15.00 | 8 (.06) | 47 | Random |
| Dominant model (CC vs. CA + AA) | 0.88 [0.70, 1.10] | 1.14 (.25) | 13.89 | 8 (.08) | 42 | Random |
| Homozygous model (AA vs. CC) | 1.44 [1.02, 2.02] | 2.09 (.04) | 14.09 | 8 (.08) | 43 | Random |
| Heterozygous model (CA vs. CC) | 1.00 [0.84, 1.18] | 0.01 (.99) | 10.72 | 8 (.22) | 25 | Fixed |
| IL-10 -592 in Asian population from 4 case-control studies (809 cases and 896 controls) | ||||||
| Allelic model (A-allele vs. C-allele) | 1.16 [1.00, 1.33] | 2.00 (.05) | 3.18 | 3 (.36) | 6 | Fixed |
| Recessive model (AA vs. CA + CC) | 1.25 [0.99, 1.59] | 1.89 (.06) | 4.48 | 3 (.21) | 33 | Fixed |
| Dominant model (CC vs. CA + AA) | 0.86 [0.69, 1.07] | 1.32 (.19) | 2.35 | 3 (.50) | 0 | Fixed |
| Homozygous model (AA vs. CC) | 1.33[0.98, 1.79] | 1.84 (.07) | 4.40 | 3 (.22) | 32 | Fixed |
| Heterozygous model (CA vs. CC) | 1.08 [0.85, 1.36] | 0.61 (.54) | 2.32 | 3 (.51) | 0 | Fixed |
| IL-10 -592 in Caucasian population from 4 case-control studies (402 cases and 772 controls) | ||||||
| Allelic model (A-allele vs C-allele) | 1.43 [0.82, 2.50] | 1.27 (0.21) | 15.73 | 3 (.001) | 81 | Random |
| Recessive model (AA vs. CA + CC) | 1.74 [0.72, 4.19] | 1.23 (.22) | 8.03 | 3 (.05) | 63 | Random |
| Dominant model (CC vs. CA + AA) | 0.74 [0.41, 1.32] | 1.02 (.31) | 10.58 | 3 (.01) | 72 | Random |
| Homozygous model (AA vs CC) | 1.79 [0.69, 4.68] | 1.20 (.23) | 8.72 | 3 (.03) | 66 | Random |
| Heterozygous model (CA vs CC) | 1.14 [0.70, 1.83] | 0.52 (.60) | 6.43 | 3 (.09) | 53 | Random |
| IL-10 -1082 in total population from 8 case-control studies (1278 cases and 1858 controls) | ||||||
| Allelic model (A-allele vs. G-allele) | 1.06 [0.89, 1.26] | 0.63 (.53) | 15.35 | 7 (.03) | 54 | Random |
| Recessive model (AA vs. GA + GG) | 1.08 [0.81, 1.43] | 0.54 (.59) | 23.14 | 7 (.002) | 70 | Random |
| Dominant model (GG vs. GA +AA) | 0.95 [0.75, 1.21] | 0.40 (.69) | 3.74 | 7 (.81) | 0 | Fixed |
| Homozygous model (AA vs. GG) | 1.18 [0.91, 1.52] | 1.24 (.22) | 4.49 | 7 (.72) | 0 | Fixed |
| IL-10 -1082 in Asian population from 4 case-control studies (631 cases and 698 controls) | ||||||
| Allelic model (A-allele vs. G-allele) | 0.87 [0.64, 1.19] | 0.86 (.39) | 8.44 | 3 (.04) | 64 | Random |
| Recessive model (AA vs. GA + GG) | 0.81 [0.47, 1.41] | 0.73 (.46) | 15.83 | 3 (.001) | 81 | Random |
| Dominant model (GG vs. GA +AA) | 1.16 [0.77, 1.74] | 0.70 (.48) | 0.60 | 3 (.90) | 0 | Fixed |
| Homozygous model (AA vs. GG) | 0.90 [0.59, 1.38] | 0.48 (.63) | 0.55 | 3 (.91) | 0 | Fixed |
| Heterozygous model (GA vs. GG) | 0.81 [0.53, 1.25] | 0.95 (.34) | 1.42 | 3 (.70) | 0 | Fixed |
| IL-10 -1082 in Caucasian population from 2 case-control studies (236 cases and 691 controls) | ||||||
| Allelic model (A-allele vs G-allele) | 1.30 [1.05, 1.62] | 2.37 (.02) | 0.89 | 1 (.34) | 0 | Fixed |
| Recessive model (AA vs GA + GG) | 1.49 [1.09, 2.03] | 2.53 (.01) | 0.22 | 1 (.64) | 0 | Fixed |
| Dominant model (GG vs GA +AA) | 0.79 [0.53, 1.18] | 1.16 (.24) | 0.78 | 1 (.38) | 0 | Fixed |
| Homozygous model (AA vs GG) | 1,58 [1.01, 2.46] | 2.01 (.04) | 0.63 | 1 (.43) | 0 | Fixed |
| Heterozygous model (GA vs GG) | 1.08 [0.70, 1.66] | 0.35 (.73) | 0.42 | 1 (.52) | 0 | Fixed |
| IL-10 -819 in total population from 2 case-control studies (440 cases and 565 controls) | ||||||
| Allelic model (C-allele vs T-allele) | 1.73 [0.73, 4.12] | 1.25 (.21) | 22.90 | 1 < .001) | 96 | Random |
| Recessive model (CC vs TC + TT) | 0.86 [0.58, 1.28] | 0.73 (.46) | 2.40 | 1 (.12) | 58 | Random |
| Dominant model (TT vs TC + CC) | 1.10 [0.47, 2.56] | 0.22 (.82) | 5.78 | 1 (.02) | 83 | Random |
| Homozygous model (CC vs TT) | 0.85 [0.33, 2.19] | 0.34 (.74) | 6.20 | 1 (.01) | 84 | Random |
| Heterozygous model (TC vs TT) | 0.97 [0.46, 2.04] | 0.07 (.94) | 0.89 | 1 (.05) | 74 | Random |
Figure 2Forest plot describing the association between the IL-10 -592 polymorphism and HIV-1 infection risk according to different genetic models: (A) allelic, (B) recessive, (C) dominant, (D) homozygous and (E) heterozygous.
Distributions of IL-10 -592, -1082, and -819 genotypes.
| First author | Year | Sample size (Cases/Controls) | No. of cases | Allele frequencies in cases, n, (%) | No. of controls | Allele frequencies in controls, n, (%) | ||||||||
| Erikstrup[ | 2007 | African | 0.912 | 194/174 | 80 | 71 | 43 | 231 (59.5) | 157 (40.5) | 68 | 81 | 25 | 217 (62.4) | 131 (37.6) |
| Chatterjee[ | 2009 | Asian | 0.055 | 180/305 | 67 | 74 | 39 | 208 (57.8) | 152 (42.2) | 140 | 122 | 43 | 402 (65.9) | 208 (34.1) |
| Naicker[ | 2009 | Caucasian | 0.798 | 64/195 | 24 | 23 | 17 | 71 (55.5) | 57 (44.5) | 97 | 80 | 18 | 274 (70.3) | 116 (29.7) |
| Sobti[ | 2010 | Asian | 0.295 | 299/300 | 36 | 136 | 127 | 208 (34.8) | 390 (65.2) | 34 | 146 | 120 | 214 (35.7) | 386 (64.3) |
| Corchado[ | 2013 | Caucasian | 0.672 | 88/51 | 43 | 38 | 7 | 124 (70.5) | 52 (29.5) | 24 | 21 | 6 | 69 (67.6) | 33 (32.4) |
| Piddubna[ | 2013 | Caucasian | 0.619 | 78/30 | 42 | 28 | 8 | 112 (71.8) | 44 (28.2) | 25 | 5 | 0 | 55 (91.7) | 5 (8.3) |
| Ramezani[ | 2015 | Asian | 0.358 | 70/31 | 31 | 35 | 4 | 97 (69.3) | 43 (30.7) | 16 | 11 | 4 | 43 (69.4) | 19 (30.6) |
| Kallas[ | 2015 | Caucasian | 0.972 | 172/496 | 113 | 49 | 10 | 275 (79.9) | 69 (20.1) | 306 | 167 | 23 | 779 (78.5) | 213 (21.5) |
| Singh[ | 2016 | Asian | 0.555 | 260/260 | 106 | 115 | 39 | 327 (62.9) | 193 (37.1) | 109 | 122 | 29 | 340 (65.4) | 180 (34.6) |
| Erikstrup[ | 2007 | African | 0.448 | 195/175 | 22 | 73 | 100 | 117 (30.0) | 273 (70.0) | 17 | 82 | 76 | 116 (33.1) | 234 (66.9) |
| Chatterjee[ | 2009 | Asian | 0.653 | 180/305 | 20 | 60 | 100 | 100 (27.8) | 260 (72.2) | 27 | 122 | 156 | 176 (28.9) | 434 (71.1) |
| Naicker[ | 2009 | Caucasian | 0.206 | 64/195 | 5 | 22 | 37 | 32 (25.0) | 96 (75.0) | 27 | 80 | 88 | 134 (34.3) | 256 (65.6) |
| Sunder[ | 2012 | Asian | 0.057 | 121/303 | 2 | 83 | 36 | 87 (36.0) | 155 (64.0) | 2 | 43 | 57 | 47 (23.0) | 157 (77.0) |
| Freitas[ | 2015 | Mixed | 0.459 | 216/294 | 14 | 79 | 123 | 107 (24.8) | 325 (75.2) | 24 | 111 | 159 | 159 (27.0) | 429 (73.0) |
| Ramezani[ | 2015 | Asian | 0.655 | 70/31 | 10 | 32 | 28 | 52 (37.1) | 88 (62.9) | 3 | 15 | 13 | 21 (33.9) | 41 (66.1) |
| Kallas[ | 2015 | Caucasian | 0.692 | 172/496 | 32 | 78 | 62 | 142 (41.3) | 202 (58.7) | 104 | 251 | 141 | 459 (46.3) | 533 (53.7) |
| Singh[ | 2016 | Asian | 0.098 | 260/260 | 21 | 119 | 120 | 161 (31.0) | 359 (69.0) | 21 | 125 | 114 | 167 (32.1) | 353 (67.9) |
| Chatterjee[ | 2009 | Asian | 0.327 | 180/305 | 39 | 74 | 67 | 152 (42.2) | 208 (57.8) | 43 | 122 | 140 | 495 (34.1) | 251 (65.9) |
| Singh[ | 2016 | Asian | 0.398 | 260/260 | 29 | 122 | 109 | 180 (34.6) | 340 (65.4) | 39 | 115 | 106 | 193 (37.1) | 327 (62.9) |
Figure 3Forest plot describing the association between the IL-10 -1082 polymorphism and HIV-1 infection risk according to different genetic models: (A) allelic, (B) recessive, (C) dominant, (D) homozygous and (E) heterozygous.
Figure 4Forest plot describing the association between the IL-10 -819 polymorphism and HIV-1 infection risk according to different genetic models: (A) allelic, (B) recessive, (C) dominant, (D) homozygous and (E) heterozygous.
Figure 5Begg funnel plot and Egger test to assess publication bias in the meta-analysis of potential associations between HIV-1 infection risk and (A, B) IL-10 -592 polymorphism or (C, D) IL-10 -1082 polymorphism. All analyses were performed using a recessive genetic model.