Literature DB >> 33234565

GenBank's reliability is uncertain for biodiversity researchers seeking species-level assignment for eDNA.

Nicolas S Locatelli1, Peter B McIntyre2, Nina O Therkildsen2, Diana S Baetscher2,3.   

Abstract

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Year:  2020        PMID： 33234565      PMCID： PMC7768753          DOI： 10.1073/pnas.2007421117

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   12.779


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  7 in total

Review 1.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

2.  DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity.

Authors:  Matthieu Leray; Nancy Knowlton
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

3.  Quantitative species-level ecology of reef fish larvae via metabarcoding.

Authors:  Naama Kimmerling; Omer Zuqert; Gil Amitai; Tamara Gurevich; Rachel Armoza-Zvuloni; Irina Kolesnikov; Igal Berenshtein; Sarah Melamed; Shlomit Gilad; Sima Benjamin; Asaph Rivlin; Moti Ohavia; Claire B Paris; Roi Holzman; Moshe Kiflawi; Rotem Sorek
Journal:  Nat Ecol Evol       Date:  2017-12-18       Impact factor: 15.460

4.  GenBank is a reliable resource for 21st century biodiversity research.

Authors:  Matthieu Leray; Nancy Knowlton; Shian-Lei Ho; Bryan N Nguyen; Ryuji J Machida
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

5.  Environmental DNA reveals seasonal shifts and potential interactions in a marine community.

Authors:  Anni Djurhuus; Collin J Closek; Ryan P Kelly; Kathleen J Pitz; Reiko P Michisaki; Hilary A Starks; Kristine R Walz; Elizabeth A Andruszkiewicz; Emily Olesin; Katherine Hubbard; Enrique Montes; Daniel Otis; Frank E Muller-Karger; Francisco P Chavez; Alexandria B Boehm; Mya Breitbart
Journal:  Nat Commun       Date:  2020-01-14       Impact factor: 14.919

6.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2007-12-11       Impact factor: 16.971

7.  Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo.

Authors:  Rosie Drinkwater; Ida Baerholm Schnell; Kristine Bohmann; Henry Bernard; Géraldine Veron; Elizabeth Clare; M Thomas P Gilbert; Stephen J Rossiter
Journal:  Mol Ecol Resour       Date:  2018-10-16       Impact factor: 7.090
  7 in total
  2 in total

1.  The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes.

Authors:  C David de Santana; Lynne R Parenti; Casey B Dillman; Jonathan A Coddington; Douglas A Bastos; Carole C Baldwin; Jansen Zuanon; Gislene Torrente-Vilara; Raphaël Covain; Naércio A Menezes; Aléssio Datovo; T Sado; M Miya
Journal:  Sci Rep       Date:  2021-09-13       Impact factor: 4.379

2.  Reply to Locatelli et al.: Evaluating species-level accuracy of GenBank metazoan sequences will require experts' effort in each group.

Authors:  Matthieu Leray; Nancy Knowlton; Shian-Lei Ho; Bryan N Nguyen; Ryuji J Machida
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-24       Impact factor: 12.779
  2 in total

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