| Literature DB >> 33226979 |
Emi A Takahashi1, Lina Masoud2, Rami Mukbel2, Javier Guitian1, Kim B Stevens1.
Abstract
Cutaneous leishmaniasis (CL) is a zoonotic vector-borne neglected tropical disease transmitted by female Phlebotomine sand flies. It is distributed globally but a large proportion of cases (70-75%) are found in just ten countries. CL is endemic in Jordan yet there is a lack of robust entomological data and true reporting status is unknown. This study aimed to map habitat suitability of the main CL vector, Phlebotomus papatasi, in Jordan as a proxy for CL risk distribution to (i) identify areas potentially at risk of CL and (ii) estimate the human population at risk of CL. A literature review identified potential environmental determinants for P. papatasi occurrence including temperature, humidity, precipitation, vegetation, wind speed, presence of human households and presence of the fat sand rat. Each predictor variable was (a) mapped; (b) standardized to a common size, resolution and scale using fuzzy membership functions; (c) assigned a weight using the analytical hierarchy process (AHP); and (d) included within a multicriteria decision analysis (MCDA) model to produce monthly maps illustrating the predicted habitat suitability (between 0 and 1) for P. papatasi in Jordan. Suitability increased over the summer months and was generally highest in the north-western regions of the country and along the Jordan Valley, areas which largely coincided with highly populated parts of the country, including areas where Syrian refugee camps are located. Habitat suitability in Jordan for the main CL vector-P. papatasi-was heterogeneous over both space and time. Suitable areas for P. papatasi coincided with highly populated areas of Jordan which suggests that the targeted implementation of control and surveillance strategies in defined areas such as those with very high CL vector suitability (>0.9 suitability) would focus only on 3.42% of the country's total geographic area, whilst still including a substantial proportion of the population at risk: estimates range from 72% (European Commission's Global Human Settlement population grid) to 89% (Gridded Population of the World) depending on the human population density data used. Therefore, high impact public health interventions could be achieved within a reduced spatial target, thus maximizing the efficient use of resources.Entities:
Year: 2020 PMID: 33226979 PMCID: PMC7721129 DOI: 10.1371/journal.pntd.0008852
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Fig 1Map of Jordan’s Governorates and locations of Syrian refugee camps (red dots).
List of model predictor variables.
A description of variables identified by previous studies and publication sources as influencing the distribution of Phlebotomus papatasi and their relationship with its occurrence.
| Variable | Variable name | Relationship with occurrence of |
|---|---|---|
| Mean monthly temperature (C°) | Temperature | Sandflies are ectotherms and thus, temperature strongly influences developmental rates, survival and longevity [ |
| Fat sand rat distribution | The fat sand rat ( | |
| Mean annual precipitation (mm) | Precipitation | Rainfall is associated with |
| Mean monthly relative humidity (%) | Relative humidity | |
| Monthly vegetation | Normalized difference vegetation index (NDVI) | Vegetation provides plant-based sugars for adult sandflies as well as food and shelter for rodents that also influence |
| Wind speed (m/s) | Wind | Wind restricts sandfly activity and they are found more abundantly in areas sheltered from wind or when wind velocity is reduced [ |
| Human settlement | Human settlement |
Georeferenced data sources and manipulations for predictor variables.
| Variable | Georeferenced map source | Data manipulations |
|---|---|---|
| Temperature (C°) | WorldClim version 2 at a 30 arc second spatial resolution (approximately 1 km2) [ | Clip Jordan country administrative area from global map; standardize resolution. |
| No map available so proxy was generated for inclusion in model | MCDA for suitability distribution of the fat sand rat’s main food source | |
| Precipitation (mm) | WorldClim version 2 at a 30 arc second spatial resolution (approximately 1 km2) [ | Clip Jordan country administrative area from global map; calculate annual precipitation by the total sum of all months; standardize resolution |
| Relative humidity (9am) (%) | CliMond climate dataset at a 10 arc minute spatial resolution [ | Clip Jordan country administrative area from global map; standardize resolution |
| NDVI | Integrated Climate Data Centre (ICDC), Hamburg University [ | Clip Jordan country administrative area from region tile; calculate average NDVI between 2000–2016 for each month |
| Wind (m/s) | WorldClim version 2 at a 30 arc second spatial resolution (approximately 1 km2) [ | Clip Jordan country administrative area from global map; standardize resolution |
| Human settlement | European Commission’s Global Human Settlement Layer (GHSL) at a 1 km2 spatial resolution [ | Clip Jordan country administrative area from global map; standardize resolution |
Climate data validation variables.
Description of climate variables, number of weather stations, and years for which data were acquired from the Jordan Meteorological Department.
| Variable | Years |
|---|---|
| Mean monthly temperature | 2010, 2012, 2014, 2016 |
| Annual precipitation | 2005–2011 |
| Mean monthly relative humidity | 2010, 2012, 2014, 2016 |
| Mean monthly wind speed | 2004, 2006, 2008, 2010, 2012, 2014, 2015 |
Predictor variables’ fuzzy membership functions.
Inclusion of the associated rationale used to convert the predictor variables into fuzzy sets for inclusion in the multicriteria decision analysis model.
| Predictor variable | Rationale |
|---|---|
| Temperature | Laboratory experiments that determined |
| Precipitation | Studies showed that there was lower probability of |
| NDVI | NDVI values range from -1 to +1; clouds and snow are characterized by negative values while soils, rock and vegetation are positive. Barren areas of rock, sand or soils exhibit very low values (0.1 to 0.2), shrub and grassland represent moderate values (0.2 to 0.3) while temperate and tropical rainforests have high values (0.6 to 0.8) [ |
| Relative humidity | Adult |
| Wind | Studies found sandfly activity to be highest when no wind was present, reduced when velocity was above 2 m/s and ceased when above 4 m/s [ |
| Human settlement | GHSL data was categorical; urban centre (3), urban cluster (2), and rural area (1). The positive relationship between |
Rating scale used for pairwise comparisons between predictor variables.
| 1/9 | 1/7 | 1/5 | 1/3 | 1 | 3 | 5 | 7 | 9 |
| Extremely | Very strongly | Strongly | Moderately | Equally | Moderately | Strongly | Very Strongly | Extremely |
| yX | ||||||||
| zX | zY | |||||||
Pairwise comparison matrix of the analytical hierarchy process (AHP) for the predictors associated with the occurrence of Phlebotomus papatasi in Jordan.
Based on the first author’s subjective judgment constructed from the literature review in Section 2.2.2.
| Temp | Relative humidity | Precip | NDVI | Wind | H. Sett. | Weight | ||
|---|---|---|---|---|---|---|---|---|
| 1 | 0.3590 | |||||||
| 1/7 | 1 | 0.0332 | ||||||
| 1/5 | 3 | 1 | 0.0615 | |||||
| 1/5 | 3 | 1 | 1 | 0.1210 | ||||
| 1/3 | 5 | 3 | 3 | 1 | 0.1210 | |||
| 1/3 | 3 | 3 | 3 | 3 | 1 | 0.1774 | ||
| 1/3 | 5 | 3 | 3 | 3 | 1 | 1 | 0.1864 |
* Consistency ratio = 0.05; Temp = temperature; Precip = precipitation; H. Sett = human settlement; NDVI = normalized difference vegetation index
Pairwise comparison matrix of the analytical hierarchy process (AHP) for the predictors associated with the occurrence of Psammomys obesus in Jordan.
Based on the first author’s subjective judgement constructed from published literature.
| NDVI | pH | Clay (%) | Sand (%) | Silt (%) | Weight | |
|---|---|---|---|---|---|---|
| 1 | 0.5556 | |||||
| 1/5 | 1 | 0.1111 | ||||
| 1/5 | 1 | 1 | 0.1111 | |||
| 1/5 | 1 | 1 | 1 | 0.1111 | ||
| 1/5 | 1 | 1 | 1 | 1 | 0.1111 |
* CR = 0.00
Fig 2Multicriteria decision analysis output for the suitability distribution of Anabasis articulata.
This was used as a proxy for the distribution of Psammomys obesus; a predictor variable for the occurrence of Phlebotomus papatasi.
Fig 3Data validation regression plots.
Results from simple linear regression analysis between weather station climate data recordings and modelled climate data using historical recordings for (A) mean monthly temperature, (B) mean monthly relative humidity, (C) mean monthly wind speed, and (D) mean annual precipitation.
Climate data validation results.
R2 values derived from the simple linear regression analysis between weather station climate data recordings and modelled climate data using historical recordings. Overall, R2 values were higher for the warmer months of the year (April-September).
| Month/Year | Mean monthly relative humidity | Mean monthly wind speed | Mean monthly temperature | Mean annual precipitation |
|---|---|---|---|---|
| January | 0.31 | 0.02 | 0.7 | |
| February | 0.3 | 0.15 | 0.73 | |
| March | 0.4 | 0.14 | 0.71 | |
| April | 0.35 | 0.3 | 0.86 | |
| May | 0.4 | 0.3 | 0.9 | |
| June | 0.38 | 0.24 | 0.84 | |
| July | 0.42 | 0.22 | 0.88 | |
| August | 0.38 | 0.28 | 0.85 | |
| September | 0.27 | 0.31 | 0.86 | |
| October | 0.13 | 0.31 | 0.79 | |
| November | 0.02 | 0.1 | 0.67 | |
| December | 0.17 | 0.01 | 0.72 | |
| 2005 | 0.83 | |||
| 2006 | 0.88 | |||
| 2007 | 0.89 | |||
| 2008 | 0.83 | |||
| 2009 | 0.87 | |||
| 2010 | 0.72 |
* P-value < 0.001
° P-value < 0.05
Fig 4Fuzzy membership maps for each predictor variable.
(A) Annual precipitation, (B) Anabasis articulata, (C) human settlement, (D) temperature, (E) relative humidity, (F) vegetation and (G) wind.
Fig 5MCDA outputs for the predicted suitability distribution of Phlebotomus papatasi in Jordan from April to September.
* show the location of Syrian refugee camps.
Fig 6Geographic areas suitable for Phlebotomus papatasi occurrence using suitability cut-offs of 0.9 to 0.5.
Sensitivity analysis results.
Mean change in values (n = 96) between original multicriteria decision analysis outputs compared to new maps with either equal weights for all predictor variables, or assuming linear membership functions for all predictor variables.
| Month | Mean change for equal weights | Mean change for linear membership function | P-value |
|---|---|---|---|
| April | 0 ± 0.11 | 0.07 ± 0.12 | < 0.01 |
| May | 0.05 ± 0.06 | 0.06 ± 0.1 | > 0.05 |
| June | 0.07 ± 0.14 | 0 ± 0.12 | < 0.01 |
| July | 0.02 ± 0.09 | 0.12 ± 0.15 | < 0.01 |
| August | 0.05 ± 0.17 | 0.12 ± 0.2 | < 0.01 |
| September | 0.18 ± 0.11 | 0.18 ± 0.18 | > 0.05 |
| Overall | 0.06 ± 0.13 | 0.09 ± 0.16 | < 0.01 |
Fig 7Population at risk of Phlebotomus papatasi exposure between April and September using different suitability cut-off points from moderate (0.5) to very high (0.9) suitability calculated using (top) the Global Population of the World (GPW) grid and (bottom) the European Commission’s Global Human Settlement (GHS) population grid.
Population at risk results.
Quantification of (i) areas suitable for Phlebotomus papatasi occurrence in relation to the whole country; (ii) the population at risk of cutaneous leishmaniasis using different population grids; and (iii) the population at risk in relation to the total population, using different suitability cut-off values.
| Suitability cut-off | % of Jordan within suitability range | PAR (GHS) | % of total Jordan population at risk (GHS) | PAR (GPW) | % of total Jordan population at risk (GPW) |
|---|---|---|---|---|---|
| 0.5 | 57.44 | 610,100 | 13.26 | 7,535,141 | 99.98 |
| 0.6 | 46.77 | 598,801 | 13.01 | 7,506,769 | 99.60 |
| 0.7 | 34.92 | 550,408 | 11.96 | 7,422,532 | 98.49 |
| 0.8 | 10.35 | 480,652 | 10.45 | 7,217,799 | 95.77 |
| 0.9 | 3.42 | 443,269 | 9.63 | 6,749,171 | 89.55 |