| Literature DB >> 33223599 |
Helena D Janse van Rensburg1, Lesetja J Legoabe1, Gisella Terre'Blanche1,2.
Abstract
ABSTRACT: To identify novel adenosine receptor (AR) ligands based on the chalcone scaffold, herein the synthesis, characterization and in vitro and in silico evaluation of 33 chalcones (15-36 and 37-41) and structurally related compounds (42-47) are reported. These compounds were characterized by radioligand binding and GTP shift assays to determine the degree and type of binding affinity, respectively, against rat (r) A1 and A2A ARs. The chalcone derivatives 24, 29, 37 and 38 possessed selective A1 affinity below 10 µM, and thus, are the most active compounds of the present series; compound 38 was the most potent selective A1 AR antagonist (K i (r) = 1.6 µM). The structure-affinity relationships (SAR) revealed that the NH2-group at position C3 of ring A of the chalcone scaffold played a key role in affinity, and also, the Br-atom at position C3' on benzylidene ring B. Upon in vitro and in silico evaluation, the novel C3 amino-substituted chalcone derivative 38-that contains an α,ß-unsaturated carbonyl system and easily allows structural modification-may possibly be a synthon in future drug discovery. GRAPHIC ABSTRACT: C3 amino-substituted chalcone derivative (38) with C3' Br substitution on benzylidene ring B possesses selective adenosine rA1 receptor affinity in micromolar range. © Institute of Chemistry, Slovak Academy of Sciences 2020.Entities:
Keywords: Base- and acid-catalysed Claisen–Schmidt condensation reactions; Chalcone; Neurological conditions; Schiff base; Selective adenosine A1 receptor antagonist
Year: 2020 PMID: 33223599 PMCID: PMC7670844 DOI: 10.1007/s11696-020-01414-9
Source DB: PubMed Journal: Chem Zvesti ISSN: 0366-6352 Impact factor: 2.097
Fig. 1The chemical structure and A1Ki (h) value (nM) of FR194921 (1)
Fig. 2The chemical structure and A1, A2A and A3Ki (h) values of 2
Fig. 3The chemical structure and A1Ki (r) values of aurone (3), 2-benzylidene-1-tetralone (4–8) and 2-benzylidene-1-indanone (9–12) derivatives
Fig. 4Synthesis of 15–36, 37–41 and 42–47 (R substituents are identified in Tables 2, 3, 4). Reagents and conditions: a EtOH, KOH (10% (w/v) aqueous solution), room temperature; b MeOH, HCl (32 wt. % in H2O, FCC), 120 °C
Ki values for the binding affinity of chalcone derivatives (15–36) against rat (r) A1 and A2A ARs
|
| ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| # | Ring A | Ring B | ||||||||
| 2 | 3 | 4 | 2′ | 3′ | 4′ | 5′ | 6′ | |||
| R1 | R2 | R3 | R1′ | R2′ | R3′ | R4′ | R5′ | |||
| Structural modification of ring A | ||||||||||
| | H | H | H | H | H | H | H | H | (35) | (79) |
| | OH | H | H | H | H | H | H | H | (65) | (129) |
| | H | H | OH | H | H | H | H | H | (56) | (83) |
| | H | H | OCH3 | H | H | H | H | H | (141) | (106) |
| | H | H | Br | H | H | H | H | H | (117) | (117) |
| Structural modification of ring B | ||||||||||
| | H | H | H | H | OH | H | H | H | (32) | (40) |
| | H | H | H | H | OCH3 | H | H | H | (33) | (106) |
| | H | H | H | H | H | OCH3 | H | H | (45) | (78) |
| | H | H | H | OCH3 | H | OCH3 | H | H | (30) | (50) |
| | H | H | H | OCH3 | H | OCH3 | OCH3 | H | 5.3 ± 1 | (28) |
| | H | H | H | OCH3 | H | OCH3 | H | OCH3 | (27) | (28) |
| | H | H | H | Br | H | H | H | H | (24) | (50) |
| | H | H | H | H | Br | H | H | H | (28) | (42) |
| | H | H | H | H | H | Br | H | H | (110) | (91) |
| | H | H | H | Cl | H | H | H | H | 6.1 ± 1.1 | (42) |
| | H | H | H | H | Cl | H | H | H | (23) | (88) |
| | H | H | H | H | Cl | Cl | H | H | (114) | (77) |
| | H | H | H | H | H | F | H | H | (49) | (98) |
| | H | H | H | H | H | CF3 | H | H | (80) | (156) |
| | H | H | H | H | CN | H | H | H | (52) | (155) |
| | H | H | H | – | – | – | – | – | (55) | (75) |
| | H | OCH3 | H | – | – | – | – | – | (43) | (73) |
aAll Ki values were determined in triplicate and expressed as mean ± standard error of the mean (SEM) in µM
bSpecific binding (%) of the radioligand at a maximum tested concentration of 100 µM were determined in duplicate and expressed as the mean in %
cRat receptors were used (rA1: rat whole brain membranes)
dRat receptors were used (rA2A: rat striatal membranes)
e0.1 nM [3H]DPCPX
f4 nM [3H]NECA
Ki values for the binding affinity of chalcone derivatives (37–41) against rat (r) A1 and A2A ARs
|
| ||||
|---|---|---|---|---|
| # | Ring B | |||
| 2′ | 3′ | |||
| R1 | R2 | |||
| Br | H | 7.1 ± 0.57a | (30)b | |
| H | Br | 1.6 ± 0.02a | (75)b | |
| Cl | H | (26)b | (23)b | |
| H | Cl | (30)b | (72)b | |
| H | F | (26)b | (71)b | |
aAll Ki values were determined in triplicate and expressed as mean ± standard error of the mean (SEM) in µM
bSpecific binding (%) of the radioligand at a maximum tested concentration of 100 µM were determined in duplicate and expressed as the mean in %
cRat receptors were used (rA1: rat whole brain membranes)
dRat receptors were used (rA2A: rat striatal membranes)
e0.1 nM [3H]DPCPX
f4 nM [3H]NECA
Ki values for the binding affinity of Schiff base derivatives (42–47) against rat (r) A1 and A2A ARs
|
| ||||||
|---|---|---|---|---|---|---|
| # | Ring B | |||||
| 2′ | 3′ | 4′ | 5′ | |||
| R1′ | R2′ | R3′ | R4′ | |||
| OH | H | OCH3 | H | (91)b | (197)b | |
| OH | H | H | OCH3 | (70)b | (75)b | |
| OH | Br | H | Cl | (101)b | (95)b | |
| OH | H | H | Cl | (44)b | (43)b | |
| OH | H | N(CH2CH3)2 | H | (74)b | (69)b | |
| – | – | – | – | (47)b | (66)b | |
aAll Ki values were determined in triplicate and expressed as mean ± standard error of the mean (SEM) in µM
bSpecific binding (%) of the radioligand at a maximum tested concentration of 100 µM were determined in duplicate and expressed as the mean in %
cRat receptors were used (rA1: rat whole brain membranes)
dRat receptors were used (rA2A: rat striatal membranes)
e0.1 nM [3H]DPCPX
f4 nM [3H]NECA
Ki values for the binding affinity of reference compounds against rat (r) A1 and A2A ARs
| # | SIg | GTP shifth | |||
|---|---|---|---|---|---|
| CPA (A1 agonist) | 0.0057 ± 0.0015 (0.0068)i (0.015)j (0.0079)k | 0.40 ± 0.17 (0.16)i (0.33)j | 0.099 ± 0.015 (0.099)i (0.099)j | 70 (24) (22) | 17 (15)i (14)j |
| DPCPX (A1 antagonist) | 0.0005 ± 0.00003 (0.0004)i (0.0005)j (0.0003)l | 0.23 ± 0.03 (0.55)i (0.53)j (0.34)l | 0.0006 ± 0.00003 (0.0004)i (0.0004)j | 468 (1362) (1060) (1133) | 1.2 (1)i (1.3)j |
| Istradefylline (A2A antagonist) | 0.19 ± 0.01 (0.23)m | 0.0014 ± 0.0003 (0.0022)m | 0.15 ± 0.02 | 7.3 (0.0096) | 0.79 |
aAll inhibition constant (Ki) values were determined in triplicate and expressed as mean ± standard error of the mean (SEM) in µM
bRat receptors were used (rA1: rat whole brain membranes)
cRat receptors were used (rA2A: rat striatal membranes)
d0.1 nM [3H]DPCPX
e4 nM [3H]NECA
fAddition of 100 µM GTP to A1 AR radioligand binding assay
gSelectivity index (SI) for the A1 AR isoform calculated as a ratio of A2AKi/A1Ki
hGTP shift calculated by dividing Ki value in the presence of 100 µM GTP by Ki value in the absence of 100 µM GTP
iLiterature value obtained from (Janse van Rensburg et al. 2017)
jLiterature value obtained from (Van der Walt and Terre’Blanche 2015)
kLiterature value obtained from (Bruns et al. 1987)
lLiterature value obtained from (Lohse et al. 1987)
mLiterature value obtained from (Shimada et al. 1997)
Fig. 5The structure–affinity relationships (SAR) of compound 24 versus 13
Fig. 6The structure–affinity relationships (SAR) of compounds 27 and 29 and 37–39; highlighting the importance of C3 NH2-substitution on ring A in combination with C3′ (meta) Br substitution on ring B for selective rA1 AR affinity
Fig. 7The structure–affinity relationships (SAR) of compound 38 versus 14
A1Ki values (in the absence and presence of GTP) and calculated GTP shifts of 24 and 38
| # | GTP shifte | ||
|---|---|---|---|
| 5.3 ± 1a | 7.8 ± 0.68 | 1.5 | |
| 1.6 ± 0.02a | 1.7 ± 1.3 | 1.1 | |
aKi values were determined in triplicate and expressed as mean ± standard error of the mean (SEM) in µM
bRat receptors were used (A1: rat whole brain membranes)
c0.1 nM [3H]DPCPX
dAddition of 100 µM GTP to A1 AR radioligand binding assay
eGTP shift calculated by dividing Ki value in the presence of 100 µM GTP by Ki value in the absence of 100 µM GTP
Fig. 8The binding curves of compounds 24 (a) and 38 (b) are examples of A1 AR antagonistic action determined via a GTP shift assay performed in triplicate (with and without 100 μM GTP) using rat whole brain membranes expressing A1 ARs with [3H]DPCPX as radioligand. Calculated GTP shift of: 1.5 (24) and 1.1 (38)
Physiochemical properties of compounds 24, 29, 37 and 38
| # | Physiochemical properties | Lipophilicity | Water solubility | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Molecular formula | Molecular weight (g/mol) | Fraction Csp3 | Num. rotatable bonds | Num. H-bond acceptors | Num. H-bond donors | Molar refractivity | TPSA (Å2) | Consensus log | Consensus log | |
| C18H18O4 | 298.33 | 0.17 | 6 | 4 | 0 | 85.72 | 44.76 | 3.36 | − 4.51 | |
| C15H13lO | 242.70 | 0 | 3 | 1 | 0 | 71.26 | 17.07 | 3.98 | − 4.89 | |
| C15H12BrNO | 302.17 | 0 | 3 | 1 | 1 | 78.35 | 43.09 | 3.46 | − 4.69 | |
| C15H12BrNO | 302.17 | 0 | 3 | 1 | 1 | 78.35 | 43.09 | 3.53 | − 4.86 | |
Pharmacokinetic properties of compounds 24, 29, 37 and 38
| # | Pharmacokinetic properties | |||||||
|---|---|---|---|---|---|---|---|---|
| GI absorption | BBB permeation | Pgp substrate | CYP12 inhibitor | CYP2C19 inhibitor | CYP2C9 inhibitor | CYP2D6 inhibitor | CYP3A4 inhibitor | |
| High | Yes | No | Yes | Yes | Yes | Yes | Yes | |
| High | Yes | No | Yes | Yes | Yes | No | No | |
| High | Yes | No | Yes | Yes | Yes | No | Yes | |
| High | Yes | No | Yes | Yes | Yes | No | Yes | |
Drug-likeness and medicinal chemistry friendliness of compounds 24, 29, 37 and 38
| # | Drug-likeness | Lead-likeness | ||||||
|---|---|---|---|---|---|---|---|---|
| Num. violations | ||||||||
| Lipinskia | Ghoseb | Veberc | Egand | Mueggee | PAINSf | Brenkg | Teagueh | |
| 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | |
| 0 | 0 | 0 | 0 | 1 | 0 | 1 | 2 | |
| 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | |
| 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | |
aLipinski: MW < 500, MLOGP < 4.15, N or O < 10, NH or OH < 5 (Lipinski et al. 1997)
bGhose: 160 < MW < 480, − 04 < WLOGP < 5.6, 40 < MR < 130, 20 < atoms < 70 (Ghose et al. 1999)
cVeber: Num. rotatable bonds < 10, TPSA < 140 (Veber et al. 2002)
dEgan: WLOGP < 5.88, TPSA < 131.6 (Egan et al. 2000)
eMuegge: 200 < MW < 600, − 2 < XLOGP < 5, TPSA < 150, num. rings < 7, num. carbon > 4, num. heteroatoms > 1, num. rotatable bonds < 15, num. H-bond acceptors < 10, num. H-bond donors < 5 (Muegge et al. 2001)
fPan assay interference compounds (PAINS) implemented from Baell and Holloway (2010)
gStructural alert implemented from Brenk et al. (2008)
hTeague: 250 < MW < 350, num. rotatable bonds < 7, XLOGP3 < 3.5 (Teague et al. 1999)
Fig. 9The pink area represents the optimal range for lipophilcity (LIPO: − 0.7 < XLOGP3 < + 5.0), size (SIZE: 150 < MW < 500), polarity (POLAR: 20 < TPSA < 130), solubility (INSOLU: logS < 6), saturation (INSATU: fraction Csp3 > 0.25) and flexibility (FLEX: num. rotatable bonds < 9). The red lines represent the said parameters of compounds 24, 29, 37 and 38. The red lines must fall completely within the pink area for a compound to be considered drug-like; therefore, compounds 24, 29, 37 and 38 are predicted not orally bioavailable
Fig. 10Compounds 24, 29, 37 and 38, which are not a substrate for Pgp (PGP-), is represented by the red circles in the yellow region. The white region is for high probability of passive absorption by the gastrointestinal tract (HIA), and the yellow region (yolk) is for high probability of brain penetration (BBB). White and yellow (yolk) regions are not mutually exclusive