| Literature DB >> 33221922 |
Jairo Navarro Gonzalez1, Ann S Zweig1, Matthew L Speir1, Daniel Schmelter1, Kate R Rosenbloom1, Brian J Raney1, Conner C Powell1, Luis R Nassar1, Nathan D Maulding1, Christopher M Lee1, Brian T Lee1, Angie S Hinrichs1, Alastair C Fyfe1, Jason D Fernandes1, Mark Diekhans1, Hiram Clawson1, Jonathan Casper1, Anna Benet-Pagès1,2, Galt P Barber1, David Haussler1,3, Robert M Kuhn1, Maximilian Haeussler1, W James Kent1.
Abstract
For more than two decades, the UCSC Genome Browser database (https://genome.ucsc.edu) has provided high-quality genomics data visualization and genome annotations to the research community. As the field of genomics grows and more data become available, new modes of display are required to accommodate new technologies. New features released this past year include a Hi-C heatmap display, a phased family trio display for VCF files, and various track visualization improvements. Striving to keep data up-to-date, new updates to gene annotations include GENCODE Genes, NCBI RefSeq Genes, and Ensembl Genes. New data tracks added for human and mouse genomes include the ENCODE registry of candidate cis-regulatory elements, promoters from the Eukaryotic Promoter Database, and NCBI RefSeq Select and Matched Annotation from NCBI and EMBL-EBI (MANE). Within weeks of learning about the outbreak of coronavirus, UCSC released a genome browser, with detailed annotation tracks, for the SARS-CoV-2 RNA reference assembly.Entities:
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Year: 2021 PMID： 33221922 PMCID： PMC7779060 DOI： 10.1093/nar/gkaa1070
Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971