Literature DB >> 33216899

WCSdb: a database of wild Coffea species.

Romain Guyot1,2, Perla Hamon1, Emmanuel Couturon1, Nathalie Raharimalala3, Jean-Jacques Rakotomalala3, Sreenath Lakkanna4, Sylvie Sabatier5, Antoine Affouard6, Pierre Bonnet5.   

Abstract

Coffee is a beverage enjoyed by millions of people worldwide and an important commodity for millions of people. Beside the two cultivated species (Coffea arabica and Coffea canephora), the 139 wild coffee species/taxa belonging to the Coffea genus are largely unknown to coffee scientists and breeders although these species may be crucial for future coffee crop development to face climate changes. Here we present the Wild Coffee Species database (WCSdb) hosted by Pl@ntNet platform (http://publish.plantnet-project.org/project/wildcofdb_en), providing information for 141 coffee species/taxa, for which 84 contain a photo gallery and 82 contain sequencing data (genotyping-by-sequencing, chloroplast or whole genome sequences). The objective of this database is to better understand and characterize the species (identification, morphology, biochemical compounds, genetic diversity and sequence data) in order to better protect and promote them. DATABASE URL: http://publish.plantnet-project.org/project/wildcofdb_en. © Crown copyright 2020.

Entities:  

Year:  2020        PMID: 33216899      PMCID: PMC7678786          DOI: 10.1093/database/baaa069

Source DB:  PubMed          Journal:  Database (Oxford)        ISSN: 1758-0463            Impact factor:   3.451


  6 in total

1.  Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species: GBS coffee phylogeny and the evolution of caffeine content.

Authors:  Perla Hamon; Corrinne E Grover; Aaron P Davis; Jean-Jacques Rakotomalala; Nathalie E Raharimalala; Victor A Albert; Hosahalli L Sreenath; Piet Stoffelen; Sharon E Mitchell; Emmanuel Couturon; Serge Hamon; Alexandre de Kochko; Dominique Crouzillat; Michel Rigoreau; Ucu Sumirat; Sélastique Akaffou; Romain Guyot
Journal:  Mol Phylogenet Evol       Date:  2017-02-16       Impact factor: 4.286

2.  The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Authors:  France Denoeud; Lorenzo Carretero-Paulet; Alexis Dereeper; Gaëtan Droc; Romain Guyot; Marco Pietrella; Chunfang Zheng; Adriana Alberti; François Anthony; Giuseppe Aprea; Jean-Marc Aury; Pascal Bento; Maria Bernard; Stéphanie Bocs; Claudine Campa; Alberto Cenci; Marie-Christine Combes; Dominique Crouzillat; Corinne Da Silva; Loretta Daddiego; Fabien De Bellis; Stéphane Dussert; Olivier Garsmeur; Thomas Gayraud; Valentin Guignon; Katharina Jahn; Véronique Jamilloux; Thierry Joët; Karine Labadie; Tianying Lan; Julie Leclercq; Maud Lepelley; Thierry Leroy; Lei-Ting Li; Pablo Librado; Loredana Lopez; Adriana Muñoz; Benjamin Noel; Alberto Pallavicini; Gaetano Perrotta; Valérie Poncet; David Pot; Michel Rigoreau; Mathieu Rouard; Julio Rozas; Christine Tranchant-Dubreuil; Robert VanBuren; Qiong Zhang; Alan C Andrade; Xavier Argout; Benoît Bertrand; Alexandre de Kochko; Giorgio Graziosi; Robert J Henry; Ray Ming; Chifumi Nagai; Steve Rounsley; David Sankoff; Giovanni Giuliano; Victor A Albert; Patrick Wincker; Philippe Lashermes
Journal:  Science       Date:  2014-09-04       Impact factor: 47.728

3.  Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories.

Authors:  Romain Guyot; Thibaud Darré; Mathilde Dupeyron; Alexandre de Kochko; Serge Hamon; Emmanuel Couturon; Dominique Crouzillat; Michel Rigoreau; Jean-Jacques Rakotomalala; Nathalie E Raharimalala; Sélastique Doffou Akaffou; Perla Hamon
Journal:  Mol Genet Genomics       Date:  2016-07-28       Impact factor: 3.291

4.  A survey of mangiferin and hydroxycinnamic acid ester accumulation in coffee (Coffea) leaves: biological implications and uses.

Authors:  Claudine Campa; Laurence Mondolot; Arsene Rakotondravao; Luc P R Bidel; Annick Gargadennec; Emmanuel Couturon; Philippe La Fisca; Jean-Jacques Rakotomalala; Christian Jay-Allemand; Aaron P Davis
Journal:  Ann Bot       Date:  2012-06-13       Impact factor: 4.357

5.  Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species.

Authors:  Christophe Guyeux; Jean-Claude Charr; Hue T M Tran; Agnelo Furtado; Robert J Henry; Dominique Crouzillat; Romain Guyot; Perla Hamon
Journal:  PLoS One       Date:  2019-06-12       Impact factor: 3.240

6.  High extinction risk for wild coffee species and implications for coffee sector sustainability.

Authors:  Aaron P Davis; Helen Chadburn; Justin Moat; Robert O'Sullivan; Serene Hargreaves; Eimear Nic Lughadha
Journal:  Sci Adv       Date:  2019-01-16       Impact factor: 14.136

  6 in total
  1 in total

1.  The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago.

Authors:  Nathalie Raharimalala; Stephane Rombauts; Andrew McCarthy; Andréa Garavito; Simon Orozco-Arias; Laurence Bellanger; Alexa Yadira Morales-Correa; Solène Froger; Stéphane Michaux; Victoria Berry; Sylviane Metairon; Coralie Fournier; Maud Lepelley; Lukas Mueller; Emmanuel Couturon; Perla Hamon; Jean-Jacques Rakotomalala; Patrick Descombes; Romain Guyot; Dominique Crouzillat
Journal:  Sci Rep       Date:  2021-04-14       Impact factor: 4.379

  1 in total

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